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ziyue shen[Author]
(3 results)?
Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.
Nature. 2020 Feb;578(7793):102-111. doi: 10.1038/s41586-020-1965-x. Epub 2020 Feb 5.
Nature. 2020.
PMID: 32025015
Free PMC article.
Author Correction: Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.
Rheinbay E, Nielsen MM, Abascal F, Wala JA, Shapira O, Tiao G, Hornshøj H, Hess JM, Juul RI, Lin Z, Feuerbach L, Sabarinathan R, Madsen T, Kim J, Mularoni L, Shuai S, Lanzós A, Herrmann C, Maruvka YE, Shen C, Amin SB, Bandopadhayay P, Bertl J, Boroevich KA, Busanovich J, Carlevaro-Fita J, Chakravarty D, Chan CWY, Craft D, Dhingra P, Diamanti K, Fonseca NA, Gonzalez-Perez A, Guo Q, Hamilton MP, Haradhvala NJ, Hong C, Isaev K, Johnson TA, Juul M, Kahles A, Kahraman A, Kim Y, Komorowski J, Kumar K, Kumar S, Lee D, Lehmann KV, Li Y, Liu EM, Lochovsky L, Park K, Pich O, Roberts ND, Saksena G, Schumacher SE, Sidiropoulos N, Sieverling L, Sinnott-Armstrong N, Stewart C, Tamborero D, Tubio JMC, Umer HM, Uusküla-Reimand L, Wadelius C, Wadi L, Yao X, Zhang CZ, Zhang J, Haber JE, Hobolth A, Imielinski M, Kellis M, Lawrence MS, von Mering C, Nakagawa H, Raphael BJ, Rubin MA, Sander C, Stein LD, Stuart JM, Tsunoda T, Wheeler DA, Johnson R, Reimand J, Gerstein M, Khurana E, Campbell PJ, López-Bigas N; PCAWG Drivers and Functional Interpretation Working Group; PCAWG Structural Variation Working Group; Weischenfeldt J, Beroukhim R, Martincorena I, Pedersen JS, Getz G; PCAWG Consortium.
Rheinbay E, et al. Among authors: shen c.
Nature. 2023 Feb;614(7948):E40. doi: 10.1038/s41586-022-05599-9.
Nature. 2023.
PMID: 36697832
Free PMC article.
No abstract available.
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scPerturb: harmonized single-cell perturbation data.
Peidli S, Green TD, Shen C, Gross T, Min J, Garda S, Yuan B, Schumacher LJ, Taylor-King JP, Marks DS, Luna A, Blüthgen N, Sander C.
Peidli S, et al. Among authors: shen c.
Nat Methods. 2024 Mar;21(3):531-540. doi: 10.1038/s41592-023-02144-y. Epub 2024 Jan 26.
Nat Methods. 2024.
PMID: 38279009
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Disulfiram use is associated with lower risk of COVID-19: A retrospective cohort study.
Fillmore N, Bell S, Shen C, Nguyen V, La J, Dubreuil M, Strymish J, Brophy M, Mehta G, Wu H, Lieberman J, Do N, Sander C.
Fillmore N, et al. Among authors: shen c.
PLoS One. 2021 Oct 28;16(10):e0259061. doi: 10.1371/journal.pone.0259061. eCollection 2021.
PLoS One. 2021.
PMID: 34710137
Free PMC article.
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Discovering in vivo cytokine-eQTL interactions from a lupus clinical trial.
Davenport EE, Amariuta T, Gutierrez-Arcelus M, Slowikowski K, Westra HJ, Luo Y, Shen C, Rao DA, Zhang Y, Pearson S, von Schack D, Beebe JS, Bing N, John S, Vincent MS, Zhang B, Raychaudhuri S.
Davenport EE, et al. Among authors: shen c.
Genome Biol. 2018 Oct 19;19(1):168. doi: 10.1186/s13059-018-1560-8.
Genome Biol. 2018.
PMID: 30340504
Free PMC article.
Clinical Trial.
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CellBox: Interpretable Machine Learning for Perturbation Biology with Application to the Design of Cancer Combination Therapy.
Yuan B, Shen C, Luna A, Korkut A, Marks DS, Ingraham J, Sander C.
Yuan B, et al. Among authors: shen c.
Cell Syst. 2021 Feb 17;12(2):128-140.e4. doi: 10.1016/j.cels.2020.11.013. Epub 2020 Dec 28.
Cell Syst. 2021.
PMID: 33373583
Free article.
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Molecular response to PARP1 inhibition in ovarian cancer cells as determined by mass spectrometry based proteomics.
Franz A, Coscia F, Shen C, Charaoui L, Mann M, Sander C.
Franz A, et al. Among authors: shen c.
J Ovarian Res. 2021 Oct 22;14(1):140. doi: 10.1186/s13048-021-00886-x.
J Ovarian Res. 2021.
PMID: 34686201
Free PMC article.
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