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Page 1
Predicting pathogenic non-coding SVs disrupting the 3D genome in 1646 whole cancer genomes using multiple instance learning.
Sci Rep. 2021 Jul 13;11(1):14411. doi: 10.1038/s41598-021-93917-y.
Sci Rep. 2021.
PMID: 34257393
Free PMC article.
TargetClone: A multi-sample approach for reconstructing subclonal evolution of tumors.
Nieboer MM, Dorssers LCJ, Straver R, Looijenga LHJ, de Ridder J.
Nieboer MM, et al.
PLoS One. 2018 Nov 29;13(11):e0208002. doi: 10.1371/journal.pone.0208002. eCollection 2018.
PLoS One. 2018.
PMID: 30496231
Free PMC article.
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Mapping and phasing of structural variation in patient genomes using nanopore sequencing.
Cretu Stancu M, van Roosmalen MJ, Renkens I, Nieboer MM, Middelkamp S, de Ligt J, Pregno G, Giachino D, Mandrile G, Espejo Valle-Inclan J, Korzelius J, de Bruijn E, Cuppen E, Talkowski ME, Marschall T, de Ridder J, Kloosterman WP.
Cretu Stancu M, et al. Among authors: nieboer mm.
Nat Commun. 2017 Nov 6;8(1):1326. doi: 10.1038/s41467-017-01343-4.
Nat Commun. 2017.
PMID: 29109544
Free PMC article.
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Molecular heterogeneity and early metastatic clone selection in testicular germ cell cancer development.
Dorssers LCJ, Gillis AJM, Stoop H, van Marion R, Nieboer MM, van Riet J, van de Werken HJG, Oosterhuis JW, de Ridder J, Looijenga LHJ.
Dorssers LCJ, et al. Among authors: nieboer mm.
Br J Cancer. 2019 Feb;120(4):444-452. doi: 10.1038/s41416-019-0381-1. Epub 2019 Feb 11.
Br J Cancer. 2019.
PMID: 30739914
Free PMC article.
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svMIL: predicting the pathogenic effect of TAD boundary-disrupting somatic structural variants through multiple instance learning.
Nieboer MM, de Ridder J.
Nieboer MM, et al.
Bioinformatics. 2020 Dec 30;36(Suppl_2):i692-i699. doi: 10.1093/bioinformatics/btaa802.
Bioinformatics. 2020.
PMID: 33381833
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