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Page 1
Single-cell epigenomic analyses implicate candidate causal variants at inherited risk loci for Alzheimer's and Parkinson's diseases.
Nat Genet. 2020 Nov;52(11):1158-1168. doi: 10.1038/s41588-020-00721-x. Epub 2020 Oct 26.
Nat Genet. 2020.
PMID: 33106633
Free PMC article.
Systematic benchmarking of single-cell ATAC-sequencing protocols.
De Rop FV, Hulselmans G, Flerin C, Soler-Vila P, Rafels A, Christiaens V, González-Blas CB, Marchese D, Caratù G, Poovathingal S, Rozenblatt-Rosen O, Slyper M, Luo W, Muus C, Duarte F, Shrestha R, Bagdatli ST, Corces MR, Mamanova L, Knights A, Meyer KB, Mulqueen R, Taherinasab A, Maschmeyer P, Pezoldt J, Lambert CLG, Iglesias M, Najle SR, Dossani ZY, Martelotto LG, Burkett Z, Lebofsky R, Martin-Subero JI, Pillai S, Sebé-Pedrós A, Deplancke B, Teichmann SA, Ludwig LS, Braun TP, Adey AC, Greenleaf WJ, Buenrostro JD, Regev A, Aerts S, Heyn H.
De Rop FV, et al. Among authors: bagdatli st.
Nat Biotechnol. 2024 Jun;42(6):916-926. doi: 10.1038/s41587-023-01881-x. Epub 2023 Aug 3.
Nat Biotechnol. 2024.
PMID: 37537502
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ArchR is a scalable software package for integrative single-cell chromatin accessibility analysis.
Granja JM, Corces MR, Pierce SE, Bagdatli ST, Choudhry H, Chang HY, Greenleaf WJ.
Granja JM, et al. Among authors: bagdatli st.
Nat Genet. 2021 Mar;53(3):403-411. doi: 10.1038/s41588-021-00790-6. Epub 2021 Feb 25.
Nat Genet. 2021.
PMID: 33633365
Free PMC article.
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The chromatin landscape of the euryarchaeon Haloferax volcanii.
Marinov GK, Bagdatli ST, Wu T, He C, Kundaje A, Greenleaf WJ.
Marinov GK, et al. Among authors: bagdatli st.
Genome Biol. 2023 Nov 6;24(1):253. doi: 10.1186/s13059-023-03095-5.
Genome Biol. 2023.
PMID: 37932847
Free PMC article.
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Simultaneous Single-Cell Profiling of the Transcriptome and Accessible Chromatin Using SHARE-seq.
Kim SH, Marinov GK, Bagdatli ST, Higashino SI, Shipony Z, Kundaje A, Greenleaf WJ.
Kim SH, et al. Among authors: bagdatli st.
Methods Mol Biol. 2023;2611:187-230. doi: 10.1007/978-1-0716-2899-7_11.
Methods Mol Biol. 2023.
PMID: 36807070
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CasKAS: direct profiling of genome-wide dCas9 and Cas9 specificity using ssDNA mapping.
Marinov GK, Kim SH, Bagdatli ST, Higashino SI, Trevino AE, Tycko J, Wu T, Bintu L, Bassik MC, He C, Kundaje A, Greenleaf WJ.
Marinov GK, et al. Among authors: bagdatli st.
Genome Biol. 2023 Apr 21;24(1):85. doi: 10.1186/s13059-023-02930-z.
Genome Biol. 2023.
PMID: 37085898
Free PMC article.
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Author Correction: ArchR is a scalable software package for integrative single-cell chromatin accessibility analysis.
Granja JM, Corces MR, Pierce SE, Bagdatli ST, Choudhry H, Chang HY, Greenleaf WJ.
Granja JM, et al. Among authors: bagdatli st.
Nat Genet. 2021 Jun;53(6):935. doi: 10.1038/s41588-021-00850-x.
Nat Genet. 2021.
PMID: 33790476
Free PMC article.
No abstract available.
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