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2005 1
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Page 1
Cell-type specialization is encoded by specific chromatin topologies.
Winick-Ng W, Kukalev A, Harabula I, Zea-Redondo L, Szabó D, Meijer M, Serebreni L, Zhang Y, Bianco S, Chiariello AM, Irastorza-Azcarate I, Thieme CJ, Sparks TM, Carvalho S, Fiorillo L, Musella F, Irani E, Torlai Triglia E, Kolodziejczyk AA, Abentung A, Apostolova G, Paul EJ, Franke V, Kempfer R, Akalin A, Teichmann SA, Dechant G, Ungless MA, Nicodemi M, Welch L, Castelo-Branco G, Pombo A. Winick-Ng W, et al. Among authors: kukalev a. Nature. 2021 Nov;599(7886):684-691. doi: 10.1038/s41586-021-04081-2. Epub 2021 Nov 17. Nature. 2021. PMID: 34789882 Free PMC article.
Multiplex-GAM: genome-wide identification of chromatin contacts yields insights overlooked by Hi-C.
Beagrie RA, Thieme CJ, Annunziatella C, Baugher C, Zhang Y, Schueler M, Kukalev A, Kempfer R, Chiariello AM, Bianco S, Li Y, Davis T, Scialdone A, Welch LR, Nicodemi M, Pombo A. Beagrie RA, et al. Among authors: kukalev a. Nat Methods. 2023 Jul;20(7):1037-1047. doi: 10.1038/s41592-023-01903-1. Epub 2023 Jun 19. Nat Methods. 2023. PMID: 37336949 Free PMC article.
SRRM2 splicing factor modulates cell fate in early development.
Carvalho S, Zea-Redondo L, Tang TCC, Stachel-Braum P, Miller D, Caldas P, Kukalev A, Diecke S, Grosswendt S, Grosso AR, Pombo A. Carvalho S, et al. Among authors: kukalev a. Biol Open. 2024 Apr 15;13(4):bio060415. doi: 10.1242/bio.060415. Epub 2024 Apr 24. Biol Open. 2024. PMID: 38656788 Free PMC article.
Comparison of the Hi-C, GAM and SPRITE methods using polymer models of chromatin.
Fiorillo L, Musella F, Conte M, Kempfer R, Chiariello AM, Bianco S, Kukalev A, Irastorza-Azcarate I, Esposito A, Abraham A, Prisco A, Pombo A, Nicodemi M. Fiorillo L, et al. Among authors: kukalev a. Nat Methods. 2021 May;18(5):482-490. doi: 10.1038/s41592-021-01135-1. Epub 2021 May 7. Nat Methods. 2021. PMID: 33963348 Free PMC article.
Extensive folding variability between homologous chromosomes in mammalian cells.
Irastorza-Azcarate I, Kukalev A, Kempfer R, Thieme CJ, Mastrobuoni G, Markowski J, Loof G, Sparks TM, Brookes E, Natarajan KN, Sauer S, Fisher AG, Nicodemi M, Ren B, Schwarz RF, Kempa S, Pombo A. Irastorza-Azcarate I, et al. Among authors: kukalev a. bioRxiv [Preprint]. 2024 May 10:2024.05.08.591087. doi: 10.1101/2024.05.08.591087. bioRxiv. 2024. PMID: 38766012 Free PMC article. Preprint.
Cks1 activates transcription by binding to the ubiquitylated proteasome.
Holic R, Kukalev A, Lane S, Andress EJ, Lau I, Yu CW, Edelmann MJ, Kessler BM, Yu VP. Holic R, et al. Among authors: kukalev a. Mol Cell Biol. 2010 Aug;30(15):3894-901. doi: 10.1128/MCB.00655-09. Epub 2010 Jun 1. Mol Cell Biol. 2010. PMID: 20516216 Free PMC article.
19 results