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MaxDIA enables library-based and library-free data-independent acquisition proteomics.
Nat Biotechnol. 2021 Dec;39(12):1563-1573. doi: 10.1038/s41587-021-00968-7. Epub 2021 Jul 8.
Nat Biotechnol. 2021.
PMID: 34239088
Free PMC article.
Expanding the Perseus Software for Omics Data Analysis With Custom Plugins.
Yu SH, Ferretti D, Schessner JP, Rudolph JD, Borner GHH, Cox J.
Yu SH, et al. Among authors: rudolph jd.
Curr Protoc Bioinformatics. 2020 Sep;71(1):e105. doi: 10.1002/cpbi.105.
Curr Protoc Bioinformatics. 2020.
PMID: 32931150
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A Network Module for the Perseus Software for Computational Proteomics Facilitates Proteome Interaction Graph Analysis.
Rudolph JD, Cox J.
Rudolph JD, et al.
J Proteome Res. 2019 May 3;18(5):2052-2064. doi: 10.1021/acs.jproteome.8b00927. Epub 2019 Apr 10.
J Proteome Res. 2019.
PMID: 30931570
Free PMC article.
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System-wide Clinical Proteomics of Breast Cancer Reveals Global Remodeling of Tissue Homeostasis.
Pozniak Y, Balint-Lahat N, Rudolph JD, Lindskog C, Katzir R, Avivi C, Pontén F, Ruppin E, Barshack I, Geiger T.
Pozniak Y, et al. Among authors: rudolph jd.
Cell Syst. 2016 Mar 23;2(3):172-84. doi: 10.1016/j.cels.2016.02.001. Epub 2016 Mar 3.
Cell Syst. 2016.
PMID: 27135363
Free article.
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Elucidation of Signaling Pathways from Large-Scale Phosphoproteomic Data Using Protein Interaction Networks.
Rudolph JD, de Graauw M, van de Water B, Geiger T, Sharan R.
Rudolph JD, et al.
Cell Syst. 2016 Dec 21;3(6):585-593.e3. doi: 10.1016/j.cels.2016.11.005.
Cell Syst. 2016.
PMID: 28009266
Free article.
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