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Page 1
Proteogenomic characterization of pancreatic ductal adenocarcinoma.
Cell. 2021 Sep 16;184(19):5031-5052.e26. doi: 10.1016/j.cell.2021.08.023.
Cell. 2021.
PMID: 34534465
Free PMC article.
In silico epitope prediction analyses highlight the potential for distracting antigen immunodominance with allogeneic cancer vaccines.
James CA, Ronning P, Cullinan D, Cotto KC, Barnell EK, Campbell KM, Skidmore ZL, Sanford DE, Goedegebuure SP, Gillanders WE, Griffith OL, Hawkins WG, Griffith M.
James CA, et al. Among authors: ronning p.
Cancer Res Commun. 2021 Nov;1(2):115-126. doi: 10.1158/2767-9764.crc-21-0029.
Cancer Res Commun. 2021.
PMID: 35611186
Free PMC article.
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PVT1 dependence in cancer with MYC copy-number increase.
Tseng YY, Moriarity BS, Gong W, Akiyama R, Tiwari A, Kawakami H, Ronning P, Reuland B, Guenther K, Beadnell TC, Essig J, Otto GM, O'Sullivan MG, Largaespada DA, Schwertfeger KL, Marahrens Y, Kawakami Y, Bagchi A.
Tseng YY, et al. Among authors: ronning p.
Nature. 2014 Aug 7;512(7512):82-6. doi: 10.1038/nature13311. Epub 2014 Jun 22.
Nature. 2014.
PMID: 25043044
Free PMC article.
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A deep learning approach to automate refinement of somatic variant calling from cancer sequencing data.
Ainscough BJ, Barnell EK, Ronning P, Campbell KM, Wagner AH, Fehniger TA, Dunn GP, Uppaluri R, Govindan R, Rohan TE, Griffith M, Mardis ER, Swamidass SJ, Griffith OL.
Ainscough BJ, et al. Among authors: ronning p.
Nat Genet. 2018 Dec;50(12):1735-1743. doi: 10.1038/s41588-018-0257-y. Epub 2018 Nov 5.
Nat Genet. 2018.
PMID: 30397337
Free PMC article.
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Standard operating procedure for somatic variant refinement of sequencing data with paired tumor and normal samples.
Barnell EK, Ronning P, Campbell KM, Krysiak K, Ainscough BJ, Sheta LM, Pema SP, Schmidt AD, Richters M, Cotto KC, Danos AM, Ramirez C, Skidmore ZL, Spies NC, Hundal J, Sediqzad MS, Kunisaki J, Gomez F, Trani L, Matlock M, Wagner AH, Swamidass SJ, Griffith M, Griffith OL.
Barnell EK, et al. Among authors: ronning p.
Genet Med. 2019 Apr;21(4):972-981. doi: 10.1038/s41436-018-0278-z. Epub 2018 Oct 5.
Genet Med. 2019.
PMID: 30287923
Free PMC article.
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