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Cell-type specialization is encoded by specific chromatin topologies.
Winick-Ng W, Kukalev A, Harabula I, Zea-Redondo L, Szabó D, Meijer M, Serebreni L, Zhang Y, Bianco S, Chiariello AM, Irastorza-Azcarate I, Thieme CJ, Sparks TM, Carvalho S, Fiorillo L, Musella F, Irani E, Torlai Triglia E, Kolodziejczyk AA, Abentung A, Apostolova G, Paul EJ, Franke V, Kempfer R, Akalin A, Teichmann SA, Dechant G, Ungless MA, Nicodemi M, Welch L, Castelo-Branco G, Pombo A. Winick-Ng W, et al. Among authors: szabo d. Nature. 2021 Nov;599(7886):684-691. doi: 10.1038/s41586-021-04081-2. Epub 2021 Nov 17. Nature. 2021. PMID: 34789882 Free PMC article.
Epigenetic regulatory layers in the 3D nucleus.
Willemin A, Szabó D, Pombo A. Willemin A, et al. Among authors: szabo d. Mol Cell. 2024 Feb 1;84(3):415-428. doi: 10.1016/j.molcel.2023.12.032. Epub 2024 Jan 18. Mol Cell. 2024. PMID: 38242127 Free article. Review.
A single dose of cocaine rewires the 3D genome structure of midbrain dopamine neurons.
Szabó D, Franke V, Bianco S, Batiuk MY, Paul EJ, Kukalev A, Pfisterer UG, Irastorza-Azcarate I, Chiariello AM, Demharter S, Zea-Redondo L, Lopez-Atalaya JP, Nicodemi M, Akalin A, Khodosevich K, Ungless MA, Winick-Ng W, Pombo A. Szabó D, et al. bioRxiv [Preprint]. 2024 May 12:2024.05.10.593308. doi: 10.1101/2024.05.10.593308. bioRxiv. 2024. PMID: 38766140 Free PMC article. Preprint.