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Year Number of Results
2018 1
2019 1
2020 6
2021 4
2022 10
2023 7
2024 3

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32 results

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Page 1
Pan-cancer proteogenomics characterization of tumor immunity.
Petralia F, Ma W, Yaron TM, Caruso FP, Tignor N, Wang JM, Charytonowicz D, Johnson JL, Huntsman EM, Marino GB, Calinawan A, Evangelista JE, Selvan ME, Chowdhury S, Rykunov D, Krek A, Song X, Turhan B, Christianson KE, Lewis DA, Deng EZ, Clarke DJB, Whiteaker JR, Kennedy JJ, Zhao L, Segura RL, Batra H, Raso MG, Parra ER, Soundararajan R, Tang X, Li Y, Yi X, Satpathy S, Wang Y, Wiznerowicz M, González-Robles TJ, Iavarone A, Gosline SJC, Reva B, Robles AI, Nesvizhskii AI, Mani DR, Gillette MA, Klein RJ, Cieslik M, Zhang B, Paulovich AG, Sebra R, Gümüş ZH, Hostetter G, Fenyö D, Omenn GS, Cantley LC, Ma'ayan A, Lazar AJ, Ceccarelli M, Wang P; Clinical Proteomic Tumor Analysis Consortium. Petralia F, et al. Among authors: clarke djb. Cell. 2024 Feb 29;187(5):1255-1277.e27. doi: 10.1016/j.cell.2024.01.027. Epub 2024 Feb 14. Cell. 2024. PMID: 38359819 Free PMC article.
Gene Set Knowledge Discovery with Enrichr.
Xie Z, Bailey A, Kuleshov MV, Clarke DJB, Evangelista JE, Jenkins SL, Lachmann A, Wojciechowicz ML, Kropiwnicki E, Jagodnik KM, Jeon M, Ma'ayan A. Xie Z, et al. Among authors: clarke djb. Curr Protoc. 2021 Mar;1(3):e90. doi: 10.1002/cpz1.90. Curr Protoc. 2021. PMID: 33780170 Free PMC article.
Interoperable RNA-Seq analysis in the cloud.
Lachmann A, Clarke DJB, Torre D, Xie Z, Ma'ayan A. Lachmann A, et al. Among authors: clarke djb. Biochim Biophys Acta Gene Regul Mech. 2020 Jun;1863(6):194521. doi: 10.1016/j.bbagrm.2020.194521. Epub 2020 Mar 7. Biochim Biophys Acta Gene Regul Mech. 2020. PMID: 32156561 Review.
Gene and drug landing page aggregator.
Clarke DJB, Kuleshov MV, Xie Z, Evangelista JE, Meyers MR, Kropiwnicki E, Jenkins SL, Ma'ayan A. Clarke DJB, et al. Bioinform Adv. 2022 Feb 28;2(1):vbac013. doi: 10.1093/bioadv/vbac013. eCollection 2022. Bioinform Adv. 2022. PMID: 35368424 Free PMC article.
Gene set predictor for post-treatment Lyme disease.
Clarke DJB, Rebman AW, Fan J, Soloski MJ, Aucott JN, Ma'ayan A. Clarke DJB, et al. Cell Rep Med. 2022 Nov 15;3(11):100816. doi: 10.1016/j.xcrm.2022.100816. Cell Rep Med. 2022. PMID: 36384094 Free PMC article.
D2H2: diabetes data and hypothesis hub.
Marino GB, Ahmed N, Xie Z, Jagodnik KM, Han J, Clarke DJB, Lachmann A, Keller MP, Attie AD, Ma'ayan A. Marino GB, et al. Among authors: clarke djb. Bioinform Adv. 2023 Dec 4;3(1):vbad178. doi: 10.1093/bioadv/vbad178. eCollection 2023. Bioinform Adv. 2023. PMID: 38107655 Free PMC article.
Getting Started with LINCS Datasets and Tools.
Xie Z, Kropiwnicki E, Wojciechowicz ML, Jagodnik KM, Shu I, Bailey A, Clarke DJB, Jeon M, Evangelista JE, V Kuleshov M, Lachmann A, Parigi AA, Sanchez JM, Jenkins SL, Ma'ayan A. Xie Z, et al. Among authors: clarke djb. Curr Protoc. 2022 Jul;2(7):e487. doi: 10.1002/cpz1.487. Curr Protoc. 2022. PMID: 35876555 Free PMC article.
Enrichr-KG: bridging enrichment analysis across multiple libraries.
Evangelista JE, Xie Z, Marino GB, Nguyen N, Clarke DJB, Ma'ayan A. Evangelista JE, et al. Among authors: clarke djb. Nucleic Acids Res. 2023 Jul 5;51(W1):W168-W179. doi: 10.1093/nar/gkad393. Nucleic Acids Res. 2023. PMID: 37166973 Free PMC article.
Making Common Fund data more findable: catalyzing a data ecosystem.
Charbonneau AL, Brady A, Czajkowski K, Aluvathingal J, Canchi S, Carter R, Chard K, Clarke DJB, Crabtree J, Creasy HH, D'Arcy M, Felix V, Giglio M, Gingrich A, Harris RM, Hodges TK, Ifeonu O, Jeon M, Kropiwnicki E, Lim MCW, Liming RL, Lumian J, Mahurkar AA, Mandal M, Munro JB, Nadendla S, Richter R, Romano C, Rocca-Serra P, Schor M, Schuler RE, Tangmunarunkit H, Waldrop A, Williams C, Word K, Sansone SA, Ma'ayan A, Wagner R, Foster I, Kesselman C, Brown CT, White O. Charbonneau AL, et al. Among authors: clarke djb. Gigascience. 2022 Nov 21;11:giac105. doi: 10.1093/gigascience/giac105. Gigascience. 2022. PMID: 36409836 Free PMC article.
Connecting omics signatures and revealing biological mechanisms with iLINCS.
Pilarczyk M, Fazel-Najafabadi M, Kouril M, Shamsaei B, Vasiliauskas J, Niu W, Mahi N, Zhang L, Clark NA, Ren Y, White S, Karim R, Xu H, Biesiada J, Bennett MF, Davidson SE, Reichard JF, Roberts K, Stathias V, Koleti A, Vidovic D, Clarke DJB, Schürer SC, Ma'ayan A, Meller J, Medvedovic M. Pilarczyk M, et al. Among authors: clarke djb. Nat Commun. 2022 Aug 9;13(1):4678. doi: 10.1038/s41467-022-32205-3. Nat Commun. 2022. PMID: 35945222 Free PMC article.
32 results