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Page 1
Landscape of allele-specific transcription factor binding in the human genome.
Nat Commun. 2021 May 12;12(1):2751. doi: 10.1038/s41467-021-23007-0.
Nat Commun. 2021.
PMID: 33980847
Free PMC article.
ANANASTRA: annotation and enrichment analysis of allele-specific transcription factor binding at SNPs.
Boytsov A, Abramov S, Aiusheeva AZ, Kasianova AM, Baulin E, Kuznetsov IA, Aulchenko YS, Kolmykov S, Yevshin I, Kolpakov F, Vorontsov IE, Makeev VJ, Kulakovskiy IV.
Boytsov A, et al.
Nucleic Acids Res. 2022 Jul 5;50(W1):W51-W56. doi: 10.1093/nar/gkac262.
Nucleic Acids Res. 2022.
PMID: 35446421
Free PMC article.
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Positional weight matrices have sufficient prediction power for analysis of noncoding variants.
Boytsov A, Abramov S, Makeev VJ, Kulakovskiy IV.
Boytsov A, et al.
F1000Res. 2022 Jan 12;11:33. doi: 10.12688/f1000research.75471.3. eCollection 2022.
F1000Res. 2022.
PMID: 35811788
Free PMC article.
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HOCOMOCO in 2024: a rebuild of the curated collection of binding models for human and mouse transcription factors.
Vorontsov IE, Eliseeva IA, Zinkevich A, Nikonov M, Abramov S, Boytsov A, Kamenets V, Kasianova A, Kolmykov S, Yevshin IS, Favorov A, Medvedeva YA, Jolma A, Kolpakov F, Makeev VJ, Kulakovskiy IV.
Vorontsov IE, et al. Among authors: boytsov a.
Nucleic Acids Res. 2024 Jan 5;52(D1):D154-D163. doi: 10.1093/nar/gkad1077.
Nucleic Acids Res. 2024.
PMID: 37971293
Free PMC article.
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