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Page 1
NetMix2: A Principled Network Propagation Algorithm for Identifying Altered Subnetworks.
J Comput Biol. 2022 Dec;29(12):1305-1323. doi: 10.1089/cmb.2022.0336.
J Comput Biol. 2022.
PMID: 36525308
Free PMC article.
Belayer: Modeling discrete and continuous spatial variation in gene expression from spatially resolved transcriptomics.
Ma C, Chitra U, Zhang S, Raphael BJ.
Ma C, et al. Among authors: chitra u.
Cell Syst. 2022 Oct 19;13(10):786-797.e13. doi: 10.1016/j.cels.2022.09.002.
Cell Syst. 2022.
PMID: 36265465
Free PMC article.
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NetMix: A Network-Structured Mixture Model for Reduced-Bias Estimation of Altered Subnetworks.
Reyna MA, Chitra U, Elyanow R, Raphael BJ.
Reyna MA, et al. Among authors: chitra u.
J Comput Biol. 2021 May;28(5):469-484. doi: 10.1089/cmb.2020.0435. Epub 2021 Jan 5.
J Comput Biol. 2021.
PMID: 33400606
Free PMC article.
Item in Clipboard
Mapping the topography of spatial gene expression with interpretable deep learning.
Chitra U, Arnold BJ, Sarkar H, Ma C, Lopez-Darwin S, Sanno K, Raphael BJ.
Chitra U, et al.
bioRxiv [Preprint]. 2023 Oct 13:2023.10.10.561757. doi: 10.1101/2023.10.10.561757.
bioRxiv. 2023.
PMID: 37873258
Free PMC article.
Preprint.
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A latent variable model for evaluating mutual exclusivity and co-occurrence between driver mutations in cancer.
Shuaibi A, Chitra U, Raphael BJ.
Shuaibi A, et al. Among authors: chitra u.
bioRxiv [Preprint]. 2024 Apr 27:2024.04.24.590995. doi: 10.1101/2024.04.24.590995.
bioRxiv. 2024.
PMID: 38712136
Free PMC article.
Preprint.
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