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2020 | 1 |
2023 | 3 |
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Page 1
An MSstats workflow for detecting differentially abundant proteins in large-scale data-independent acquisition mass spectrometry experiments with FragPipe processing.
Nat Protoc. 2024 May 20. doi: 10.1038/s41596-024-01000-3. Online ahead of print.
Nat Protoc. 2024.
PMID: 38769142
Review.
MSstatsShiny: A GUI for Versatile, Scalable, and Reproducible Statistical Analyses of Quantitative Proteomic Experiments.
Kohler D, Kaza M, Pasi C, Huang T, Staniak M, Mohandas D, Sabido E, Choi M, Vitek O.
Kohler D, et al. Among authors: staniak m.
J Proteome Res. 2023 Feb 3;22(2):551-556. doi: 10.1021/acs.jproteome.2c00603. Epub 2023 Jan 9.
J Proteome Res. 2023.
PMID: 36622173
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Statistical Detection of Differentially Abundant Proteins in Experiments with Repeated Measures Designs and Isobaric Labeling.
Huang T, Staniak M, Veiga Leprevost FD, Figueroa-Navedo AM, Ivanov AR, Nesvizhskii AI, Choi M, Vitek O.
Huang T, et al. Among authors: staniak m.
J Proteome Res. 2023 Aug 4;22(8):2641-2659. doi: 10.1021/acs.jproteome.3c00155. Epub 2023 Jul 19.
J Proteome Res. 2023.
PMID: 37467362
Free PMC article.
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MSstats Version 4.0: Statistical Analyses of Quantitative Mass Spectrometry-Based Proteomic Experiments with Chromatography-Based Quantification at Scale.
Kohler D, Staniak M, Tsai TH, Huang T, Shulman N, Bernhardt OM, MacLean BX, Nesvizhskii AI, Reiter L, Sabido E, Choi M, Vitek O.
Kohler D, et al. Among authors: staniak m.
J Proteome Res. 2023 May 5;22(5):1466-1482. doi: 10.1021/acs.jproteome.2c00834. Epub 2023 Apr 5.
J Proteome Res. 2023.
PMID: 37018319
Free PMC article.
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Allogeneic Hematopoietic Stem Cell Transplantation for Paroxysmal Nocturnal Hemoglobinuria: Multicenter Analysis by the Polish Adult Leukemia Group.
Markiewicz M, Drozd-Sokolowska J, Biecek P, Dzierzak-Mietla M, Boguradzki P, Staniak M, Piatkowska-Jakubas B, Piekarska A, Tormanowska M, Halaburda K, Ussowicz M, Waszczuk-Gajda A, Basak G, Bołkun L, Rybka J, Sadus-Wojciechowska M, Giebel S, Szmigielska-Kaplon A, Mendek-Czajkowska E, Warzybok K, Burdacki A, Dwilewicz-Trojaczek J.
Markiewicz M, et al. Among authors: staniak m.
Biol Blood Marrow Transplant. 2020 Oct;26(10):1833-1839. doi: 10.1016/j.bbmt.2020.05.024. Epub 2020 Jun 6.
Biol Blood Marrow Transplant. 2020.
PMID: 32512214
Free article.
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