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Page 1
Predicting Mutations Generated by Cas9, Base Editing, and Prime Editing in Mammalian Cells.
CRISPR J. 2023 Aug;6(4):325-338. doi: 10.1089/crispr.2023.0016. Epub 2023 Jun 20.
CRISPR J. 2023.
PMID: 37339457
Review.
Predicting base editing outcomes using position-specific sequence determinants.
Pallaseni A, Peets EM, Koeppel J, Weller J, Vanderstichele T, Ho UL, Crepaldi L, van Leeuwen J, Allen F, Parts L.
Pallaseni A, et al.
Nucleic Acids Res. 2022 Apr 8;50(6):3551-3564. doi: 10.1093/nar/gkac161.
Nucleic Acids Res. 2022.
PMID: 35286377
Free PMC article.
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Prediction of prime editing insertion efficiencies using sequence features and DNA repair determinants.
Koeppel J, Weller J, Peets EM, Pallaseni A, Kuzmin I, Raudvere U, Peterson H, Liberante FG, Parts L.
Koeppel J, et al. Among authors: pallaseni a.
Nat Biotechnol. 2023 Oct;41(10):1446-1456. doi: 10.1038/s41587-023-01678-y. Epub 2023 Feb 16.
Nat Biotechnol. 2023.
PMID: 36797492
Free PMC article.
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The interplay of DNA repair context with target sequence predictably biasses Cas9-generated mutations.
Pallaseni A, Peets EM, Girling G, Crepaldi L, Kuzmin I, Raudvere U, Peterson H, Serçin Ö, Mardin BR, Kosicki M, Parts L.
Pallaseni A, et al.
bioRxiv [Preprint]. 2023 Jun 28:2023.06.28.546891. doi: 10.1101/2023.06.28.546891.
bioRxiv. 2023.
PMID: 37425722
Free PMC article.
Preprint.
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