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2011 3
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2018 1
2019 1
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2021 2
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Page 1
A hidden Markov model for copy number variant prediction from whole genome resequencing data.
Shen Y, Gu Y, Pe'er I. Shen Y, et al. Among authors: pe er i. BMC Bioinformatics. 2011;12 Suppl 6(Suppl 6):S4. doi: 10.1186/1471-2105-12-S6-S4. Epub 2011 Jul 28. BMC Bioinformatics. 2011. PMID: 21989326 Free PMC article.
AVAILABILITY: A program implemented in Java, Zinfandel, is available at http://www.cs.columbia.edu/~itsik/zinfandel/...
AVAILABILITY: A program implemented in Java, Zinfandel, is available at http://www.cs.columbia.edu/~itsik/zinfandel/...
Coverage tradeoffs and power estimation in the design of whole-genome sequencing experiments for detecting association.
Shen Y, Song R, Pe'er I. Shen Y, et al. Among authors: pe er i. Bioinformatics. 2011 Jul 15;27(14):1995-7. doi: 10.1093/bioinformatics/btr305. Epub 2011 Jun 2. Bioinformatics. 2011. PMID: 21636589 Free PMC article.
AVAILABILITY: A web tool implementing the methods is available at http://www.cs.columbia.edu/~itsik/OPERA/....
AVAILABILITY: A web tool implementing the methods is available at http://www.cs.columbia.edu/~itsik/OPERA/....
Novel ultra-rare exonic variants identified in a founder population implicate cadherins in schizophrenia.
Lencz T, Yu J, Khan RR, Flaherty E, Carmi S, Lam M, Ben-Avraham D, Barzilai N, Bressman S, Darvasi A, Cho JH, Clark LN, Gümüş ZH, Vijai J, Klein RJ, Lipkin S, Offit K, Ostrer H, Ozelius LJ, Peter I, Malhotra AK, Maniatis T, Atzmon G, Pe'er I. Lencz T, et al. Among authors: pe er i. Neuron. 2021 May 5;109(9):1465-1478.e4. doi: 10.1016/j.neuron.2021.03.004. Epub 2021 Mar 22. Neuron. 2021. PMID: 33756103 Free PMC article.
Genome-wide mapping of IBD segments in an Ashkenazi PD cohort identifies associated haplotypes.
Vacic V, Ozelius LJ, Clark LN, Bar-Shira A, Gana-Weisz M, Gurevich T, Gusev A, Kedmi M, Kenny EE, Liu X, Mejia-Santana H, Mirelman A, Raymond D, Saunders-Pullman R, Desnick RJ, Atzmon G, Burns ER, Ostrer H, Hakonarson H, Bergman A, Barzilai N, Darvasi A, Peter I, Guha S, Lencz T, Giladi N, Marder K, Pe'er I, Bressman SB, Orr-Urtreger A. Vacic V, et al. Among authors: pe er i. Hum Mol Genet. 2014 Sep 1;23(17):4693-702. doi: 10.1093/hmg/ddu158. Epub 2014 May 19. Hum Mol Genet. 2014. PMID: 24842889 Free PMC article.
High-depth whole genome sequencing of an Ashkenazi Jewish reference panel: enhancing sensitivity, accuracy, and imputation.
Lencz T, Yu J, Palmer C, Carmi S, Ben-Avraham D, Barzilai N, Bressman S, Darvasi A, Cho JH, Clark LN, Gümüş ZH, Joseph V, Klein R, Lipkin S, Offit K, Ostrer H, Ozelius LJ, Peter I, Atzmon G, Pe'er I. Lencz T, et al. Among authors: pe er i. Hum Genet. 2018 Apr;137(4):343-355. doi: 10.1007/s00439-018-1886-z. Epub 2018 Apr 28. Hum Genet. 2018. PMID: 29705978 Free PMC article.