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Page 1
Following the tracks: How transcription factor binding dynamics control transcription.
Biophys J. 2022 May 3;121(9):1583-1592. doi: 10.1016/j.bpj.2022.03.026. Epub 2022 Mar 23.
Biophys J. 2022.
PMID: 35337845
Free PMC article.
Review.
Transcription factor clusters enable target search but do not contribute to target gene activation.
Meeussen JVW, Pomp W, Brouwer I, de Jonge WJ, Patel HP, Lenstra TL.
Meeussen JVW, et al. Among authors: de jonge wj.
Nucleic Acids Res. 2023 Jun 23;51(11):5449-5468. doi: 10.1093/nar/gkad227.
Nucleic Acids Res. 2023.
PMID: 36987884
Free PMC article.
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Genome-wide off-rates reveal how DNA binding dynamics shape transcription factor function.
de Jonge WJ, Brok M, Lijnzaad P, Kemmeren P, Holstege FC.
de Jonge WJ, et al.
Mol Syst Biol. 2020 Oct;16(10):e9885. doi: 10.15252/msb.20209885.
Mol Syst Biol. 2020.
PMID: 33280256
Free PMC article.
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An Optimized Chromatin Immunoprecipitation Protocol for Quantification of Protein-DNA Interactions.
de Jonge WJ, Brok M, Kemmeren P, Holstege FCP.
de Jonge WJ, et al.
STAR Protoc. 2020 Jun 19;1(1):100020. doi: 10.1016/j.xpro.2020.100020.
STAR Protoc. 2020.
PMID: 32685929
Free PMC article.
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Molecular mechanisms that distinguish TFIID housekeeping from regulatable SAGA promoters.
de Jonge WJ, O'Duibhir E, Lijnzaad P, van Leenen D, Groot Koerkamp MJ, Kemmeren P, Holstege FC.
de Jonge WJ, et al.
EMBO J. 2017 Feb 1;36(3):274-290. doi: 10.15252/embj.201695621. Epub 2016 Dec 15.
EMBO J. 2017.
PMID: 27979920
Free PMC article.
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Sequence-Directed Action of RSC Remodeler and General Regulatory Factors Modulates +1 Nucleosome Position to Facilitate Transcription.
Kubik S, O'Duibhir E, de Jonge WJ, Mattarocci S, Albert B, Falcone JL, Bruzzone MJ, Holstege FCP, Shore D.
Kubik S, et al. Among authors: de jonge wj.
Mol Cell. 2018 Jul 5;71(1):89-102.e5. doi: 10.1016/j.molcel.2018.05.030.
Mol Cell. 2018.
PMID: 29979971
Free article.
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