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MULTI-seq: sample multiplexing for single-cell RNA sequencing using lipid-tagged indices.
Nat Methods. 2019 Jul;16(7):619-626. doi: 10.1038/s41592-019-0433-8. Epub 2019 Jun 17.
Nat Methods. 2019.
PMID: 31209384
Free PMC article.
Commitment and oncogene-induced plasticity of human stem cell-derived pancreatic acinar and ductal organoids.
Huang L, Desai R, Conrad DN, Leite NC, Akshinthala D, Lim CM, Gonzalez R, Muthuswamy LB, Gartner Z, Muthuswamy SK.
Huang L, et al. Among authors: conrad dn.
Cell Stem Cell. 2021 Jun 3;28(6):1090-1104.e6. doi: 10.1016/j.stem.2021.03.022. Epub 2021 Apr 28.
Cell Stem Cell. 2021.
PMID: 33915081
Free PMC article.
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Rapid deployment of SARS-CoV-2 testing: The CLIAHUB.
Crawford ED, Acosta I, Ahyong V, Anderson EC, Arevalo S, Asarnow D, Axelrod S, Ayscue P, Azimi CS, Azumaya CM, Bachl S, Bachmutsky I, Bhaduri A, Brown JB, Batson J, Behnert A, Boileau RM, Bollam SR, Bonny AR, Booth D, Borja MJB, Brown D, Buie B, Burnett CE, Byrnes LE, Cabral KA, Cabrera JP, Caldera S, Canales G, Castañeda GR, Chan AP, Chang CR, Charles-Orszag A, Cheung C, Chio U, Chow ED, Citron YR, Cohen A, Cohn LB, Chiu C, Cole MA, Conrad DN, Constantino A, Cote A, Crayton-Hall T, Darmanis S, Detweiler AM, Dial RL, Dong S, Duarte EM, Dynerman D, Egger R, Fanton A, Frumm SM, Fu BXH, Garcia VE, Garcia J, Gladkova C, Goldman M, Gomez-Sjoberg R, Gordon MG, Grove JCR, Gupta S, Haddjeri-Hopkins A, Hadley P, Haliburton J, Hao SL, Hartoularos G, Herrera N, Hilberg M, Ho KYE, Hoppe N, Hosseinzadeh S, Howard CJ, Hussmann JA, Hwang E, Ingebrigtsen D, Jackson JR, Jowhar ZM, Kain D, Kim JYS, Kistler A, Kreutzfeld O, Kulsuptrakul J, Kung AF, Langelier C, Laurie MT, Lee L, Leng K, Leon KE, Leonetti MD, Levan SR, Li S, Li AW, Liu J, Lubin HS, Lyden A, Mann J, Mann S, Margulis G, Marquez DM, Marsh BP, Martyn C, McCarthy EE, McGeever A, Merriman AF, Meyer LK, Miller S, Moore MK, Mowery CT,…
See abstract for full author list ➔
Crawford ED, et al. Among authors: conrad dn.
PLoS Pathog. 2020 Oct 28;16(10):e1008966. doi: 10.1371/journal.ppat.1008966. eCollection 2020 Oct.
PLoS Pathog. 2020.
PMID: 33112933
Free PMC article.
No abstract available.
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deMULTIplex2: robust sample demultiplexing for scRNA-seq.
Zhu Q, Conrad DN, Gartner ZJ.
Zhu Q, et al. Among authors: conrad dn.
bioRxiv [Preprint]. 2023 Apr 12:2023.04.11.536275. doi: 10.1101/2023.04.11.536275.
bioRxiv. 2023.
PMID: 37090649
Free PMC article.
Updated.
Preprint.
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deMULTIplex2: robust sample demultiplexing for scRNA-seq.
Zhu Q, Conrad DN, Gartner ZJ.
Zhu Q, et al. Among authors: conrad dn.
Genome Biol. 2024 Jan 30;25(1):37. doi: 10.1186/s13059-024-03177-y.
Genome Biol. 2024.
PMID: 38291503
Free PMC article.
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AMULET: a novel read count-based method for effective multiplet detection from single nucleus ATAC-seq data.
Thibodeau A, Eroglu A, McGinnis CS, Lawlor N, Nehar-Belaid D, Kursawe R, Marches R, Conrad DN, Kuchel GA, Gartner ZJ, Banchereau J, Stitzel ML, Cicek AE, Ucar D.
Thibodeau A, et al. Among authors: conrad dn.
Genome Biol. 2021 Sep 1;22(1):252. doi: 10.1186/s13059-021-02469-x.
Genome Biol. 2021.
PMID: 34465366
Free PMC article.
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