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High-sensitive nascent transcript sequencing reveals BRD4-specific control of widespread enhancer and target gene transcription.
Nat Commun. 2023 Aug 17;14(1):4971. doi: 10.1038/s41467-023-40633-y.
Nat Commun. 2023.
PMID: 37591883
Free PMC article.
Dynamic Modeling of Transcriptional Gene Regulatory Networks.
Handzlik JE, Loh YL, Manu.
Handzlik JE, et al.
Methods Mol Biol. 2021;2328:67-97. doi: 10.1007/978-1-0716-1534-8_5.
Methods Mol Biol. 2021.
PMID: 34251620
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Data-driven modeling predicts gene regulatory network dynamics during the differentiation of multipotential hematopoietic progenitors.
Handzlik JE, Manu.
Handzlik JE, et al.
PLoS Comput Biol. 2022 Jan 14;18(1):e1009779. doi: 10.1371/journal.pcbi.1009779. eCollection 2022 Jan.
PLoS Comput Biol. 2022.
PMID: 35030198
Free PMC article.
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Classification-Based Inference of Dynamical Models of Gene Regulatory Networks.
Fehr DA, Handzlik JE, Manu, Loh YL.
Fehr DA, et al. Among authors: handzlik je.
G3 (Bethesda). 2019 Dec 3;9(12):4183-4195. doi: 10.1534/g3.119.400603.
G3 (Bethesda). 2019.
PMID: 31624138
Free PMC article.
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Manatee: detection and quantification of small non-coding RNAs from next-generation sequencing data.
Handzlik JE, Tastsoglou S, Vlachos IS, Hatzigeorgiou AG.
Handzlik JE, et al.
Sci Rep. 2020 Jan 20;10(1):705. doi: 10.1038/s41598-020-57495-9.
Sci Rep. 2020.
PMID: 31959833
Free PMC article.
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