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Modular, efficient and constant-memory single-cell RNA-seq preprocessing.
Nat Biotechnol. 2021 Jul;39(7):813-818. doi: 10.1038/s41587-021-00870-2. Epub 2021 Apr 1.
Nat Biotechnol. 2021.
PMID: 33795888
kallisto, bustools, and kb-python for quantifying bulk, single-cell, and single-nucleus RNA-seq.
Sullivan DK, Min KHJ, Hjörleifsson KE, Luebbert L, Holley G, Moses L, Gustafsson J, Bray NL, Pimentel H, Booeshaghi AS, Melsted P, Pachter L.
Sullivan DK, et al. Among authors: hjorleifsson ke.
bioRxiv [Preprint]. 2024 Jan 23:2023.11.21.568164. doi: 10.1101/2023.11.21.568164.
bioRxiv. 2024.
PMID: 38045414
Free PMC article.
Preprint.
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Efficient and accurate detection of viral sequences at single-cell resolution reveals putative novel viruses perturbing host gene expression.
Luebbert L, Sullivan DK, Carilli M, Hjörleifsson KE, Winnett AV, Chari T, Pachter L.
Luebbert L, et al. Among authors: hjorleifsson ke.
bioRxiv [Preprint]. 2024 May 4:2023.12.11.571168. doi: 10.1101/2023.12.11.571168.
bioRxiv. 2024.
PMID: 38168363
Free PMC article.
Preprint.
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