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In vivo screening characterizes chromatin factor functions during normal and malignant hematopoiesis.
Lara-Astiaso D, Goñi-Salaverri A, Mendieta-Esteban J, Narayan N, Del Valle C, Gross T, Giotopoulos G, Beinortas T, Navarro-Alonso M, Aguado-Alvaro LP, Zazpe J, Marchese F, Torrea N, Calvo IA, Lopez CK, Alignani D, Lopez A, Saez B, Taylor-King JP, Prosper F, Fortelny N, Huntly BJP. Lara-Astiaso D, et al. Among authors: gross t. Nat Genet. 2023 Sep;55(9):1542-1554. doi: 10.1038/s41588-023-01471-2. Epub 2023 Aug 14. Nat Genet. 2023. PMID: 37580596 Free PMC article.
scPerturb: harmonized single-cell perturbation data.
Peidli S, Green TD, Shen C, Gross T, Min J, Garda S, Yuan B, Schumacher LJ, Taylor-King JP, Marks DS, Luna A, Blüthgen N, Sander C. Peidli S, et al. Among authors: gross t. Nat Methods. 2024 Mar;21(3):531-540. doi: 10.1038/s41592-023-02144-y. Epub 2024 Jan 26. Nat Methods. 2024. PMID: 38279009
Modelling signalling networks from perturbation data.
Dorel M, Klinger B, Gross T, Sieber A, Prahallad A, Bosdriesz E, Wessels LFA, Blüthgen N. Dorel M, et al. Among authors: gross t. Bioinformatics. 2018 Dec 1;34(23):4079-4086. doi: 10.1093/bioinformatics/bty473. Bioinformatics. 2018. PMID: 29931053
Robust network inference using response logic.
Gross T, Wongchenko MJ, Yan Y, Blüthgen N. Gross T, et al. Bioinformatics. 2019 Jul 15;35(14):i634-i642. doi: 10.1093/bioinformatics/btz326. Bioinformatics. 2019. PMID: 31510692 Free PMC article.
RECOVER identifies synergistic drug combinations in vitro through sequential model optimization.
Bertin P, Rector-Brooks J, Sharma D, Gaudelet T, Anighoro A, Gross T, Martínez-Peña F, Tang EL, Suraj MS, Regep C, Hayter JBR, Korablyov M, Valiante N, van der Sloot A, Tyers M, Roberts CES, Bronstein MM, Lairson LL, Taylor-King JP, Bengio Y. Bertin P, et al. Among authors: gross t. Cell Rep Methods. 2023 Oct 23;3(10):100599. doi: 10.1016/j.crmeth.2023.100599. Epub 2023 Oct 4. Cell Rep Methods. 2023. PMID: 37797618 Free PMC article.
3D RNA and Functional Interactions from Evolutionary Couplings.
Weinreb C, Riesselman AJ, Ingraham JB, Gross T, Sander C, Marks DS. Weinreb C, et al. Among authors: gross t. Cell. 2016 May 5;165(4):963-75. doi: 10.1016/j.cell.2016.03.030. Epub 2016 Apr 14. Cell. 2016. PMID: 27087444 Free PMC article.