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A Taxonomically-informed Mass Spectrometry Search Tool for Microbial Metabolomics Data.
Res Sq [Preprint]. 2023 Aug 3:rs.3.rs-3189768. doi: 10.21203/rs.3.rs-3189768/v1.
Res Sq. 2023.
PMID: 37577622
Free PMC article.
Updated.
Preprint.
microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data.
Zuffa S, Schmid R, Bauermeister A, P Gomes PW, Caraballo-Rodriguez AM, El Abiead Y, Aron AT, Gentry EC, Zemlin J, Meehan MJ, Avalon NE, Cichewicz RH, Buzun E, Terrazas MC, Hsu CY, Oles R, Ayala AV, Zhao J, Chu H, Kuijpers MCM, Jackrel SL, Tugizimana F, Nephali LP, Dubery IA, Madala NE, Moreira EA, Costa-Lotufo LV, Lopes NP, Rezende-Teixeira P, Jimenez PC, Rimal B, Patterson AD, Traxler MF, Pessotti RC, Alvarado-Villalobos D, Tamayo-Castillo G, Chaverri P, Escudero-Leyva E, Quiros-Guerrero LM, Bory AJ, Joubert J, Rutz A, Wolfender JL, Allard PM, Sichert A, Pontrelli S, Pullman BS, Bandeira N, Gerwick WH, Gindro K, Massana-Codina J, Wagner BC, Forchhammer K, Petras D, Aiosa N, Garg N, Liebeke M, Bourceau P, Kang KB, Gadhavi H, de Carvalho LPS, Silva Dos Santos M, Pérez-Lorente AI, Molina-Santiago C, Romero D, Franke R, Brönstrup M, Vera Ponce de León A, Pope PB, La Rosa SL, La Barbera G, Roager HM, Laursen MF, Hammerle F, Siewert B, Peintner U, Licona-Cassani C, Rodriguez-Orduña L, Rampler E, Hildebrand F, Koellensperger G, Schoeny H, Hohenwallner K, Panzenboeck L, Gregor R, O'Neill EC, Roxborough ET, Odoi J, Bale NJ, Ding S, Sinninghe Damsté JS, Guan XL, Cui JJ, Ju KS, Silva…
See abstract for full author list ➔
Zuffa S, et al. Among authors: aiosa n.
Nat Microbiol. 2024 Feb;9(2):336-345. doi: 10.1038/s41564-023-01575-9. Epub 2024 Feb 5.
Nat Microbiol. 2024.
PMID: 38316926
Free PMC article.
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Metabolomics Analysis of Bacterial Pathogen Burkholderia thailandensis and Mammalian Host Cells in Co-culture.
Aiosa N, Sinha A, Jaiyesimi OA, da Silva RR, Branda SS, Garg N.
Aiosa N, et al.
ACS Infect Dis. 2022 Aug 12;8(8):1646-1662. doi: 10.1021/acsinfecdis.2c00233. Epub 2022 Jun 29.
ACS Infect Dis. 2022.
PMID: 35767828
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Whole-Cell MALDI-ToF MS Coupled with Untargeted Metabolomics Facilitates Investigations of Microbial Chemical Interactions.
Aiosa N, Sinha A, Albataineh H, Phillips AM, Mageeney CM, Wilde DS, Williams KP, Collette NM, Branda SS, Garg N.
Aiosa N, et al.
Chembiochem. 2023 Apr 3;24(7):e202200802. doi: 10.1002/cbic.202200802. Epub 2023 Mar 10.
Chembiochem. 2023.
PMID: 36734186
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Pseudobulbiferamides: Plasmid-Encoded Ureidopeptide Natural Products with Biosynthetic Gene Clusters Shared Among Marine Bacteria of Different Genera.
Zhong W, Aiosa N, Deutsch JM, Garg N, Agarwal V.
Zhong W, et al. Among authors: aiosa n.
J Nat Prod. 2023 Oct 27;86(10):2414-2420. doi: 10.1021/acs.jnatprod.3c00595. Epub 2023 Sep 15.
J Nat Prod. 2023.
PMID: 37713418
Free PMC article.
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