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cirCodAn: A GHMM-based tool for accurate prediction of coding regions in circRNA.
Adv Protein Chem Struct Biol. 2024;139:289-334. doi: 10.1016/bs.apcsb.2023.11.012. Epub 2024 Feb 17.
Adv Protein Chem Struct Biol. 2024.
PMID: 38448139
ToPS: a framework to manipulate probabilistic models of sequence data.
Kashiwabara AY, Bonadio I, Onuchic V, Amado F, Mathias R, Durham AM.
Kashiwabara AY, et al.
PLoS Comput Biol. 2013;9(10):e1003234. doi: 10.1371/journal.pcbi.1003234. Epub 2013 Oct 3.
PLoS Comput Biol. 2013.
PMID: 24098098
Free PMC article.
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DNA methylation landscape of hepatoblastomas reveals arrest at early stages of liver differentiation and cancer-related alterations.
Maschietto M, Rodrigues TC, Kashiwabara AY, de Araujo ÉSS, Marques Aguiar TF, da Costa CML, da Cunha IW, Dos Reis Vasques L, Cypriano M, Brentani H, de Toledo SRC, Pearson PL, Carraro DM, Rosenberg C, Krepischi ACV.
Maschietto M, et al. Among authors: kashiwabara ay.
Oncotarget. 2016 Dec 25;8(58):97871-97889. doi: 10.18632/oncotarget.14208. eCollection 2017 Nov 17.
Oncotarget. 2016.
PMID: 29228658
Free PMC article.
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Decreasing the number of false positives in sequence classification.
Machado-Lima A, Kashiwabara AY, Durham AM.
Machado-Lima A, et al. Among authors: kashiwabara ay.
BMC Genomics. 2010 Dec 22;11 Suppl 5(Suppl 5):S10. doi: 10.1186/1471-2164-11-S5-S10.
BMC Genomics. 2010.
PMID: 21210966
Free PMC article.
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