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A host-microbiota interactome reveals extensive transkingdom connectivity.
Sonnert ND, Rosen CE, Ghazi AR, Franzosa EA, Duncan-Lowey B, González-Hernández JA, Huck JD, Yang Y, Dai Y, Rice TA, Nguyen MT, Song D, Cao Y, Martin AL, Bielecka AA, Fischer S, Guan C, Oh J, Huttenhower C, Ring AM, Palm NW. Sonnert ND, et al. Among authors: ghazi ar. Nature. 2024 Apr;628(8006):171-179. doi: 10.1038/s41586-024-07162-0. Epub 2024 Mar 20. Nature. 2024. PMID: 38509360
Use of Exome Sequencing for Infants in Intensive Care Units: Ascertainment of Severe Single-Gene Disorders and Effect on Medical Management.
Meng L, Pammi M, Saronwala A, Magoulas P, Ghazi AR, Vetrini F, Zhang J, He W, Dharmadhikari AV, Qu C, Ward P, Braxton A, Narayanan S, Ge X, Tokita MJ, Santiago-Sim T, Dai H, Chiang T, Smith H, Azamian MS, Robak L, Bostwick BL, Schaaf CP, Potocki L, Scaglia F, Bacino CA, Hanchard NA, Wangler MF, Scott D, Brown C, Hu J, Belmont JW, Burrage LC, Graham BH, Sutton VR, Craigen WJ, Plon SE, Lupski JR, Beaudet AL, Gibbs RA, Muzny DM, Miller MJ, Wang X, Leduc MS, Xiao R, Liu P, Shaw C, Walkiewicz M, Bi W, Xia F, Lee B, Eng CM, Yang Y, Lalani SR. Meng L, et al. JAMA Pediatr. 2017 Dec 4;171(12):e173438. doi: 10.1001/jamapediatrics.2017.3438. Epub 2017 Dec 4. JAMA Pediatr. 2017. PMID: 28973083 Free PMC article.
Design tools for MPRA experiments.
Ghazi AR, Chen ES, Henke DM, Madan N, Edelstein LC, Shaw CA. Ghazi AR, et al. Bioinformatics. 2018 Aug 1;34(15):2682-2683. doi: 10.1093/bioinformatics/bty150. Bioinformatics. 2018. PMID: 30052913 Free PMC article.
High-sensitivity pattern discovery in large, paired multiomic datasets.
Ghazi AR, Sucipto K, Rahnavard A, Franzosa EA, McIver LJ, Lloyd-Price J, Schwager E, Weingart G, Moon YS, Morgan XC, Waldron L, Huttenhower C. Ghazi AR, et al. Bioinformatics. 2022 Jun 24;38(Suppl 1):i378-i385. doi: 10.1093/bioinformatics/btac232. Bioinformatics. 2022. PMID: 35758795 Free PMC article.