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Gut microbiome and metabolome profiling in Framingham heart study reveals cholesterol-metabolizing bacteria.
Li C, Stražar M, Mohamed AMT, Pacheco JA, Walker RL, Lebar T, Zhao S, Lockart J, Dame A, Thurimella K, Jeanfavre S, Brown EM, Ang QY, Berdy B, Sergio D, Invernizzi R, Tinoco A, Pishchany G, Vasan RS, Balskus E, Huttenhower C, Vlamakis H, Clish C, Shaw SY, Plichta DR, Xavier RJ. Li C, et al. Among authors: strazar m. Cell. 2024 Apr 11;187(8):1834-1852.e19. doi: 10.1016/j.cell.2024.03.014. Epub 2024 Apr 2. Cell. 2024. PMID: 38569543
Mobile genetic elements from the maternal microbiome shape infant gut microbial assembly and metabolism.
Vatanen T, Jabbar KS, Ruohtula T, Honkanen J, Avila-Pacheco J, Siljander H, Stražar M, Oikarinen S, Hyöty H, Ilonen J, Mitchell CM, Yassour M, Virtanen SM, Clish CB, Plichta DR, Vlamakis H, Knip M, Xavier RJ. Vatanen T, et al. Among authors: strazar m. Cell. 2022 Dec 22;185(26):4921-4936.e15. doi: 10.1016/j.cell.2022.11.023. Cell. 2022. PMID: 36563663 Free PMC article.
A distinct clade of Bifidobacterium longum in the gut of Bangladeshi children thrives during weaning.
Vatanen T, Ang QY, Siegwald L, Sarker SA, Le Roy CI, Duboux S, Delannoy-Bruno O, Ngom-Bru C, Boulangé CL, Stražar M, Avila-Pacheco J, Deik A, Pierce K, Bullock K, Dennis C, Sultana S, Sayed S, Rahman M, Ahmed T, Modesto M, Mattarelli P, Clish CB, Vlamakis H, Plichta DR, Sakwinska O, Xavier RJ. Vatanen T, et al. Among authors: strazar m. Cell. 2022 Nov 10;185(23):4280-4297.e12. doi: 10.1016/j.cell.2022.10.011. Epub 2022 Nov 1. Cell. 2022. PMID: 36323316 Free article.
Linking microbial genes to plasma and stool metabolites uncovers host-microbial interactions underlying ulcerative colitis disease course.
Schirmer M, Stražar M, Avila-Pacheco J, Rojas-Tapias DF, Brown EM, Temple E, Deik A, Bullock K, Jeanfavre S, Pierce K, Jin S, Invernizzi R, Pust MM, Costliow Z, Mack DR, Griffiths AM, Walters T, Boyle BM, Kugathasan S, Vlamakis H, Hyams J, Denson L, Clish CB, Xavier RJ. Schirmer M, et al. Among authors: strazar m. Cell Host Microbe. 2024 Feb 14;32(2):209-226.e7. doi: 10.1016/j.chom.2023.12.013. Epub 2024 Jan 11. Cell Host Microbe. 2024. PMID: 38215740
Rationally-defined microbial consortia suppress multidrug-resistant proinflammatory Enterobacteriaceae via ecological control.
Honda K, Furuichi M, Kawaguchi T, Pust MM, Yasuma-Mitobe K, Plichta D, Hasegawa N, Ohya T, Bhattarai S, Sasajima S, Yoshimasa A, Tuganbaev T, Yaginuma M, Ueda M, Okahashi N, Amafuji K, Kiridooshi Y, Sugita K, Stražar M, Skelly A, Suda W, Hattori M, Nakamoto N, Caballero S, Norman J, Olle B, Tanoue T, Arita M, Bucci V, Atarashi K, Xavier R. Honda K, et al. Among authors: strazar m. Res Sq [Preprint]. 2023 Oct 23:rs.3.rs-3462622. doi: 10.21203/rs.3.rs-3462622/v1. Res Sq. 2023. PMID: 37961431 Free PMC article. Preprint.
Yeast as a cell factory: current state and perspectives.
Kavšček M, Stražar M, Curk T, Natter K, Petrovič U. Kavšček M, et al. Among authors: strazar m. Microb Cell Fact. 2015 Jun 30;14:94. doi: 10.1186/s12934-015-0281-x. Microb Cell Fact. 2015. PMID: 26122609 Free PMC article. Review.
scOrange-a tool for hands-on training of concepts from single-cell data analytics.
Stražar M, Žagar L, Kokošar J, Tanko V, Erjavec A, Poličar PG, Starič A, Demšar J, Shaulsky G, Menon V, Lemire A, Parikh A, Zupan B. Stražar M, et al. Bioinformatics. 2019 Jul 15;35(14):i4-i12. doi: 10.1093/bioinformatics/btz348. Bioinformatics. 2019. PMID: 31510695 Free PMC article. Review.
The influence of the gut microbiome on BCG-induced trained immunity.
Stražar M, Mourits VP, Koeken VACM, de Bree LCJ, Moorlag SJCFM, Joosten LAB, van Crevel R, Vlamakis H, Netea MG, Xavier RJ. Stražar M, et al. Genome Biol. 2021 Sep 22;22(1):275. doi: 10.1186/s13059-021-02482-0. Genome Biol. 2021. PMID: 34551799 Free PMC article.
17 results