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Page 1
Panorama: a targeted proteomics knowledge base.
Sharma V, Eckels J, Taylor GK, Shulman NJ, Stergachis AB, Joyner SA, Yan P, Whiteaker JR, Halusa GN, Schilling B, Gibson BW, Colangelo CM, Paulovich AG, Carr SA, Jaffe JD, MacCoss MJ, MacLean B. Sharma V, et al. Among authors: eckels j. J Proteome Res. 2014 Sep 5;13(9):4205-10. doi: 10.1021/pr5006636. Epub 2014 Aug 18. J Proteome Res. 2014. PMID: 25102069 Free PMC article.
Audit logs to enforce document integrity in Skyline and Panorama.
Rohde T, Chupalov R, Shulman N, Sharma V, Eckels J, Pratt BS, MacCoss MJ, MacLean BX. Rohde T, et al. Among authors: eckels j. Bioinformatics. 2020 Aug 1;36(15):4366-4368. doi: 10.1093/bioinformatics/btaa547. Bioinformatics. 2020. PMID: 32467974 Free PMC article.
A tuberculosis ontology for host systems biology.
Levine DM, Dutta NK, Eckels J, Scanga C, Stein C, Mehra S, Kaushal D, Karakousis PC, Salamon H. Levine DM, et al. Among authors: eckels j. Tuberculosis (Edinb). 2015 Sep;95(5):570-4. doi: 10.1016/j.tube.2015.05.012. Epub 2015 Jun 30. Tuberculosis (Edinb). 2015. PMID: 26190839 Free PMC article.
A framework for quality control in quantitative proteomics.
Tsantilas KA, Merrihew GE, Robbins JE, Johnson RS, Park J, Plubell DL, Huang E, Riffle M, Sharma V, MacLean BX, Eckels J, Wu CC, Bereman MS, Spencer SE, Hoofnagle AN, MacCoss MJ. Tsantilas KA, et al. Among authors: eckels j. bioRxiv [Preprint]. 2024 Apr 25:2024.04.12.589318. doi: 10.1101/2024.04.12.589318. bioRxiv. 2024. PMID: 38645098 Free PMC article. Preprint.
A cross-platform toolkit for mass spectrometry and proteomics.
Chambers MC, Maclean B, Burke R, Amodei D, Ruderman DL, Neumann S, Gatto L, Fischer B, Pratt B, Egertson J, Hoff K, Kessner D, Tasman N, Shulman N, Frewen B, Baker TA, Brusniak MY, Paulse C, Creasy D, Flashner L, Kani K, Moulding C, Seymour SL, Nuwaysir LM, Lefebvre B, Kuhlmann F, Roark J, Rainer P, Detlev S, Hemenway T, Huhmer A, Langridge J, Connolly B, Chadick T, Holly K, Eckels J, Deutsch EW, Moritz RL, Katz JE, Agus DB, MacCoss M, Tabb DL, Mallick P. Chambers MC, et al. Among authors: eckels j. Nat Biotechnol. 2012 Oct;30(10):918-20. doi: 10.1038/nbt.2377. Nat Biotechnol. 2012. PMID: 23051804 Free PMC article.