Dunning Hotopp JC - Search Results

1

X-ray crystal structure of Escherichia coli taurine/alpha-ketoglutarate dioxygenase complexed to ferrous iron and substrates.

Elkins JM, Ryle MJ, Clifton IJ, Dunning Hotopp JC, Lloyd JS, Burzlaff NI, Baldwin JE, Hausinger RP, Roach PL. Elkins JM, et al. Among authors: dunning hotopp jc. Biochemistry. 2002 Apr 23;41(16):5185-92. doi: 10.1021/bi016014e. Biochemistry. 2002. PMID: 11955067

2

Probing the 2,4-dichlorophenoxyacetate/alpha-ketoglutarate dioxygenase substrate-binding site by site-directed mutagenesis and mechanism-based inactivation.

Dunning Hotopp JC, Hausinger RP. Dunning Hotopp JC, et al. Biochemistry. 2002 Aug 6;41(31):9787-94. doi: 10.1021/bi026057a. Biochemistry. 2002. PMID: 12146944

3

Intrinsic tryptophan fluorescence as a probe of metal and alpha-ketoglutarate binding to TfdA, a mononuclear non-heme iron dioxygenase.

Dunning Hotopp JC, Auchtung TA, Hogan DA, Hausinger RP. Dunning Hotopp JC, et al. J Inorg Biochem. 2003 Jan 1;93(1-2):66-70. doi: 10.1016/s0162-0134(02)00436-1. J Inorg Biochem. 2003. PMID: 12538054

4

Improved metagenome assemblies through selective enrichment of bacterial genomic DNA from eukaryotic host genomic DNA using ATAC-seq.

Cantin LJ, Dunning Hotopp JC, Foster JM. Cantin LJ, et al. Among authors: dunning hotopp jc. Front Microbiol. 2024 Feb 15;15:1352378. doi: 10.3389/fmicb.2024.1352378. eCollection 2024. Front Microbiol. 2024. PMID: 38426058 Free PMC article.

5

Common analysis of direct RNA sequencinG CUrrently leads to misidentification of m⁵C at GCU motifs.

Watson KJ, Bromley RE, Sparklin BC, Gasser MT, Bhattacharya T, Lebov JF, Tyson T, Dai N, Teigen LE, Graf KT, Foster JM, Michalski M, Bruno VM, Lindsey AR, Corrêa IR Jr, Hardy RW, Newton IL, Dunning Hotopp JC. Watson KJ, et al. Among authors: dunning hotopp jc. Life Sci Alliance. 2023 Nov 29;7(2):e202302201. doi: 10.26508/lsa.202302201. Print 2024 Feb. Life Sci Alliance. 2023. PMID: 38030223 Free PMC article.

6

Accumulation of endosymbiont genomes in an insect autosome followed by endosymbiont replacement.

Tvedte ES, Gasser M, Zhao X, Tallon LJ, Sadzewicz L, Bromley RE, Chung M, Mattick J, Sparklin BC, Dunning Hotopp JC. Tvedte ES, et al. Among authors: dunning hotopp jc. Curr Biol. 2022 Jun 20;32(12):2786-2795.e5. doi: 10.1016/j.cub.2022.05.024. Epub 2022 Jun 6. Curr Biol. 2022. PMID: 35671755 Free PMC article.

7

X-treme loss of sequence diversity linked to neo-X chromosomes in filarial nematodes.

Mattick J, Libro S, Bromley R, Chaicumpa W, Chung M, Cook D, Khan MB, Kumar N, Lau YL, Misra-Bhattacharya S, Rao R, Sadzewicz L, Saeung A, Shahab M, Sparklin BC, Steven A, Turner JD, Tallon LJ, Taylor MJ, Moorhead AR, Michalski M, Foster JM, Dunning Hotopp JC. Mattick J, et al. Among authors: dunning hotopp jc. PLoS Negl Trop Dis. 2021 Oct 27;15(10):e0009838. doi: 10.1371/journal.pntd.0009838. eCollection 2021 Oct. PLoS Negl Trop Dis. 2021. PMID: 34705823 Free PMC article.

8

Evaluation of a high-throughput, cost-effective Illumina library preparation kit.

Tvedte ES, Michalski J, Cheng S, Patkus RS, Tallon LJ, Sadzewicz L, Bruno VM, Silva JC, Rasko DA, Dunning Hotopp JC. Tvedte ES, et al. Among authors: dunning hotopp jc. Sci Rep. 2021 Aug 5;11(1):15925. doi: 10.1038/s41598-021-94911-0. Sci Rep. 2021. PMID: 34354114 Free PMC article.

9

Best practices on the differential expression analysis of multi-species RNA-seq.

Chung M, Bruno VM, Rasko DA, Cuomo CA, Muñoz JF, Livny J, Shetty AC, Mahurkar A, Dunning Hotopp JC. Chung M, et al. Among authors: dunning hotopp jc. Genome Biol. 2021 Apr 29;22(1):121. doi: 10.1186/s13059-021-02337-8. Genome Biol. 2021. PMID: 33926528 Free PMC article. Review.

10

Comparison of long-read sequencing technologies in interrogating bacteria and fly genomes.

Tvedte ES, Gasser M, Sparklin BC, Michalski J, Hjelmen CE, Johnston JS, Zhao X, Bromley R, Tallon LJ, Sadzewicz L, Rasko DA, Dunning Hotopp JC. Tvedte ES, et al. Among authors: dunning hotopp jc. G3 (Bethesda). 2021 Jun 17;11(6):jkab083. doi: 10.1093/g3journal/jkab083. G3 (Bethesda). 2021. PMID: 33768248 Free PMC article.

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