Bonneau R - Search Results

1

Contact order and ab initio protein structure prediction.

Bonneau R, Ruczinski I, Tsai J, Baker D. Bonneau R, et al. Protein Sci. 2002 Aug;11(8):1937-44. doi: 10.1110/ps.3790102. Protein Sci. 2002. PMID: 12142448 Free PMC article.

2

Distributions of beta sheets in proteins with application to structure prediction.

Ruczinski I, Kooperberg C, Bonneau R, Baker D. Ruczinski I, et al. Among authors: bonneau r. Proteins. 2002 Jul 1;48(1):85-97. doi: 10.1002/prot.10123. Proteins. 2002. PMID: 12012340

3

De novo prediction of three-dimensional structures for major protein families.

Bonneau R, Strauss CE, Rohl CA, Chivian D, Bradley P, Malmström L, Robertson T, Baker D. Bonneau R, et al. J Mol Biol. 2002 Sep 6;322(1):65-78. doi: 10.1016/s0022-2836(02)00698-8. J Mol Biol. 2002. PMID: 12215415

4

Ab initio methods.

Chivian D, Robertson T, Bonneau R, Baker D. Chivian D, et al. Among authors: bonneau r. Methods Biochem Anal. 2003;44:547-57. doi: 10.1002/0471721204.ch27. Methods Biochem Anal. 2003. PMID: 12647404 Review. No abstract available.

5

Ab initio protein structure prediction of CASP III targets using ROSETTA.

Simons KT, Bonneau R, Ruczinski I, Baker D. Simons KT, et al. Among authors: bonneau r. Proteins. 1999;Suppl 3:171-6. doi: 10.1002/(sici)1097-0134(1999)37:3+<171::aid-prot21>3.3.co;2-q. Proteins. 1999. PMID: 10526365

6

Ab initio protein structure prediction: progress and prospects.

Bonneau R, Baker D. Bonneau R, et al. Annu Rev Biophys Biomol Struct. 2001;30:173-89. doi: 10.1146/annurev.biophys.30.1.173. Annu Rev Biophys Biomol Struct. 2001. PMID: 11340057 Review.

7

Functional inferences from blind ab initio protein structure predictions.

Bonneau R, Tsai J, Ruczinski I, Baker D. Bonneau R, et al. J Struct Biol. 2001 May-Jun;134(2-3):186-90. doi: 10.1006/jsbi.2000.4370. J Struct Biol. 2001. PMID: 11551178 Review.

8

Rosetta in CASP4: progress in ab initio protein structure prediction.

Bonneau R, Tsai J, Ruczinski I, Chivian D, Rohl C, Strauss CE, Baker D. Bonneau R, et al. Proteins. 2001;Suppl 5:119-26. doi: 10.1002/prot.1170. Proteins. 2001. PMID: 11835488

9

An improved protein decoy set for testing energy functions for protein structure prediction.

Tsai J, Bonneau R, Morozov AV, Kuhlman B, Rohl CA, Baker D. Tsai J, et al. Among authors: bonneau r. Proteins. 2003 Oct 1;53(1):76-87. doi: 10.1002/prot.10454. Proteins. 2003. PMID: 12945051

10

Automated prediction of CASP-5 structures using the Robetta server.

Chivian D, Kim DE, Malmström L, Bradley P, Robertson T, Murphy P, Strauss CE, Bonneau R, Rohl CA, Baker D. Chivian D, et al. Among authors: bonneau r. Proteins. 2003;53 Suppl 6:524-33. doi: 10.1002/prot.10529. Proteins. 2003. PMID: 14579342

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