Mirny LA - Search Results

1

A metabolic network in the evolutionary context: multiscale structure and modularity.

Spirin V, Gelfand MS, Mironov AA, Mirny LA. Spirin V, et al. Among authors: mirny la. Proc Natl Acad Sci U S A. 2006 Jun 6;103(23):8774-9. doi: 10.1073/pnas.0510258103. Epub 2006 May 26. Proc Natl Acad Sci U S A. 2006. PMID: 16731630 Free PMC article.

2

How evolution makes proteins fold quickly.

Mirny LA, Abkevich VI, Shakhnovich EI. Mirny LA, et al. Proc Natl Acad Sci U S A. 1998 Apr 28;95(9):4976-81. doi: 10.1073/pnas.95.9.4976. Proc Natl Acad Sci U S A. 1998. PMID: 9560213 Free PMC article.

3

Statistical significance of protein structure prediction by threading.

Mirny LA, Finkelstein AV, Shakhnovich EI. Mirny LA, et al. Proc Natl Acad Sci U S A. 2000 Aug 29;97(18):9978-83. doi: 10.1073/pnas.160271197. Proc Natl Acad Sci U S A. 2000. PMID: 10954732 Free PMC article.

4

Using orthologous and paralogous proteins to identify specificity determining residues.

Mirny LA, Gelfand MS. Mirny LA, et al. Genome Biol. 2002;3(3):PREPRINT0002. doi: 10.1186/gb-2002-3-3-preprint0002. Epub 2002 Feb 19. Genome Biol. 2002. PMID: 11897020 Free article.

5

Structural analysis of conserved base pairs in protein-DNA complexes.

Mirny LA, Gelfand MS. Mirny LA, et al. Nucleic Acids Res. 2002 Apr 1;30(7):1704-11. doi: 10.1093/nar/30.7.1704. Nucleic Acids Res. 2002. PMID: 11917033 Free PMC article.

6

Using orthologous and paralogous proteins to identify specificity-determining residues in bacterial transcription factors.

Mirny LA, Gelfand MS. Mirny LA, et al. J Mol Biol. 2002 Aug 2;321(1):7-20. doi: 10.1016/s0022-2836(02)00587-9. J Mol Biol. 2002. PMID: 12139929

7

Amino acids determining enzyme-substrate specificity in prokaryotic and eukaryotic protein kinases.

Li L, Shakhnovich EI, Mirny LA. Li L, et al. Among authors: mirny la. Proc Natl Acad Sci U S A. 2003 Apr 15;100(8):4463-8. doi: 10.1073/pnas.0737647100. Epub 2003 Apr 4. Proc Natl Acad Sci U S A. 2003. PMID: 12679523 Free PMC article.

8

Protein complexes and functional modules in molecular networks.

Spirin V, Mirny LA. Spirin V, et al. Among authors: mirny la. Proc Natl Acad Sci U S A. 2003 Oct 14;100(21):12123-8. doi: 10.1073/pnas.2032324100. Epub 2003 Sep 29. Proc Natl Acad Sci U S A. 2003. PMID: 14517352 Free PMC article.

9

How gene order is influenced by the biophysics of transcription regulation.

Kolesov G, Wunderlich Z, Laikova ON, Gelfand MS, Mirny LA. Kolesov G, et al. Among authors: mirny la. Proc Natl Acad Sci U S A. 2007 Aug 28;104(35):13948-53. doi: 10.1073/pnas.0700672104. Epub 2007 Aug 20. Proc Natl Acad Sci U S A. 2007. PMID: 17709750 Free PMC article.

10

Nucleosome-mediated cooperativity between transcription factors.

Mirny LA. Mirny LA. Proc Natl Acad Sci U S A. 2010 Dec 28;107(52):22534-9. doi: 10.1073/pnas.0913805107. Epub 2010 Dec 13. Proc Natl Acad Sci U S A. 2010. PMID: 21149679 Free PMC article.

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