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Predicting indirect readout effects in protein-DNA interactions.
Zhang Y, Xi Z, Hegde RS, Shakked Z, Crothers DM. Zhang Y, et al. Proc Natl Acad Sci U S A. 2004 Jun 1;101(22):8337-41. doi: 10.1073/pnas.0402319101. Epub 2004 May 17. Proc Natl Acad Sci U S A. 2004. PMID: 15148366 Free PMC article.
Statistical-mechanical theory of DNA looping.
Zhang Y, McEwen AE, Crothers DM, Levene SD. Zhang Y, et al. Biophys J. 2006 Mar 15;90(6):1903-12. doi: 10.1529/biophysj.105.070490. Epub 2005 Dec 16. Biophys J. 2006. PMID: 16361335 Free PMC article.
Quantifying and optimizing single-molecule switching nanoscopy at high speeds.
Lin Y, Long JJ, Huang F, Duim WC, Kirschbaum S, Zhang Y, Schroeder LK, Rebane AA, Velasco MG, Virrueta A, Moonan DW, Jiao J, Hernandez SY, Zhang Y, Bewersdorf J. Lin Y, et al. Among authors: zhang y. PLoS One. 2015 May 26;10(5):e0128135. doi: 10.1371/journal.pone.0128135. eCollection 2015. PLoS One. 2015. PMID: 26011109 Free PMC article.
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