Sali A - Search Results

1

Host pathogen protein interactions predicted by comparative modeling.

Davis FP, Barkan DT, Eswar N, McKerrow JH, Sali A. Davis FP, et al. Among authors: sali a. Protein Sci. 2007 Dec;16(12):2585-96. doi: 10.1110/ps.073228407. Epub 2007 Oct 26. Protein Sci. 2007. PMID: 17965183 Free PMC article.

2

Protein structure modeling for structural genomics.

Sánchez R, Pieper U, Melo F, Eswar N, Martí-Renom MA, Madhusudhan MS, Mirković N, Sali A. Sánchez R, et al. Among authors: sali a. Nat Struct Biol. 2000 Nov;7 Suppl:986-90. doi: 10.1038/80776. Nat Struct Biol. 2000. PMID: 11104007 Review.

3

Homology-based annotation yields 1,042 new candidate genes in the Drosophila melanogaster genome.

Gopal S, Schroeder M, Pieper U, Sczyrba A, Aytekin-Kurban G, Bekiranov S, Fajardo JE, Eswar N, Sanchez R, Sali A, Gaasterland T. Gopal S, et al. Among authors: sali a. Nat Genet. 2001 Mar;27(3):337-40. doi: 10.1038/85922. Nat Genet. 2001. PMID: 11242120

4

MODBASE, a database of annotated comparative protein structure models.

Pieper U, Eswar N, Stuart AC, Ilyin VA, Sali A. Pieper U, et al. Among authors: sali a. Nucleic Acids Res. 2002 Jan 1;30(1):255-9. doi: 10.1093/nar/30.1.255. Nucleic Acids Res. 2002. PMID: 11752309 Free PMC article.

5

Structural genomics: a pipeline for providing structures for the biologist.

Chance MR, Bresnick AR, Burley SK, Jiang JS, Lima CD, Sali A, Almo SC, Bonanno JB, Buglino JA, Boulton S, Chen H, Eswar N, He G, Huang R, Ilyin V, McMahan L, Pieper U, Ray S, Vidal M, Wang LK. Chance MR, et al. Among authors: sali a. Protein Sci. 2002 Apr;11(4):723-38. doi: 10.1110/ps.4570102. Protein Sci. 2002. PMID: 11910018 Free PMC article. Review. No abstract available.

6

Study of the structural dynamics of the E coli 70S ribosome using real-space refinement.

Gao H, Sengupta J, Valle M, Korostelev A, Eswar N, Stagg SM, Van Roey P, Agrawal RK, Harvey SC, Sali A, Chapman MS, Frank J. Gao H, et al. Among authors: sali a. Cell. 2003 Jun 13;113(6):789-801. doi: 10.1016/s0092-8674(03)00427-6. Cell. 2003. PMID: 12809609 Free article.

7

EVA: Evaluation of protein structure prediction servers.

Koh IY, Eyrich VA, Marti-Renom MA, Przybylski D, Madhusudhan MS, Eswar N, Graña O, Pazos F, Valencia A, Sali A, Rost B. Koh IY, et al. Among authors: sali a. Nucleic Acids Res. 2003 Jul 1;31(13):3311-5. doi: 10.1093/nar/gkg619. Nucleic Acids Res. 2003. PMID: 12824315 Free PMC article.

8

Tools for comparative protein structure modeling and analysis.

Eswar N, John B, Mirkovic N, Fiser A, Ilyin VA, Pieper U, Stuart AC, Marti-Renom MA, Madhusudhan MS, Yerkovich B, Sali A. Eswar N, et al. Among authors: sali a. Nucleic Acids Res. 2003 Jul 1;31(13):3375-80. doi: 10.1093/nar/gkg543. Nucleic Acids Res. 2003. PMID: 12824331 Free PMC article.

9

MODBASE, a database of annotated comparative protein structure models, and associated resources.

Pieper U, Eswar N, Braberg H, Madhusudhan MS, Davis FP, Stuart AC, Mirkovic N, Rossi A, Marti-Renom MA, Fiser A, Webb B, Greenblatt D, Huang CC, Ferrin TE, Sali A. Pieper U, et al. Among authors: sali a. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D217-22. doi: 10.1093/nar/gkh095. Nucleic Acids Res. 2004. PMID: 14681398 Free PMC article.

10

Alignment of protein sequences by their profiles.

Marti-Renom MA, Madhusudhan MS, Sali A. Marti-Renom MA, et al. Among authors: sali a. Protein Sci. 2004 Apr;13(4):1071-87. doi: 10.1110/ps.03379804. Protein Sci. 2004. PMID: 15044736 Free PMC article.

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