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The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts.
Genome Information Integration Project And H-Invitational 2; Yamasaki C, Murakami K, Fujii Y, Sato Y, Harada E, Takeda J, Taniya T, Sakate R, Kikugawa S, Shimada M, Tanino M, Koyanagi KO, Barrero RA, Gough C, Chun HW, Habara T, Hanaoka H, Hayakawa Y, Hilton PB, Kaneko Y, Kanno M, Kawahara Y, Kawamura T, Matsuya A, Nagata N, Nishikata K, Noda AO, Nurimoto S, Saichi N, Sakai H, Sanbonmatsu R, Shiba R, Suzuki M, Takabayashi K, Takahashi A, Tamura T, Tanaka M, Tanaka S, Todokoro F, Yamaguchi K, Yamamoto N, Okido T, Mashima J, Hashizume A, Jin L, Lee KB, Lin YC, Nozaki A, Sakai K, Tada M, Miyazaki S, Makino T, Ohyanagi H, Osato N, Tanaka N, Suzuki Y, Ikeo K, Saitou N, Sugawara H, O'Donovan C, Kulikova T, Whitfield E, Halligan B, Shimoyama M, Twigger S, Yura K, Kimura K, Yasuda T, Nishikawa T, Akiyama Y, Motono C, Mukai Y, Nagasaki H, Suwa M, Horton P, Kikuno R, Ohara O, Lancet D, Eveno E, Graudens E, Imbeaud S, Debily MA, Hayashizaki Y, Amid C, Han M, Osanger A, Endo T, Thomas MA, Hirakawa M, Makalowski W, Nakao M, Kim NS, Yoo HS, De Souza SJ, Bonaldo Mde F, Niimura Y, Kuryshev V, Schupp I, Wiemann S, Bellgard M, Shionyu M, Jia L, Thierry-Mieg D, Thierry-Mieg J, Wagner L, Zhang … See abstract for full author list ➔ Genome Information Integration Project And H-Invitational 2, et al. Among authors: de souza sj. Nucleic Acids Res. 2008 Jan;36(Database issue):D793-9. doi: 10.1093/nar/gkm999. Epub 2007 Dec 18. Nucleic Acids Res. 2008. PMID: 18089548 Free PMC article.
The Human Anatomic Gene Expression Library (H-ANGEL), the H-Inv integrative display of human gene expression across disparate technologies and platforms.
Tanino M, Debily MA, Tamura T, Hishiki T, Ogasawara O, Murakawa K, Kawamoto S, Itoh K, Watanabe S, de Souza SJ, Imbeaud S, Graudens E, Eveno E, Hilton P, Sudo Y, Kelso J, Ikeo K, Imanishi T, Gojobori T, Auffray C, Hide W, Okubo K. Tanino M, et al. Among authors: de souza sj. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D567-72. doi: 10.1093/nar/gki104. Nucleic Acids Res. 2005. PMID: 15608263 Free PMC article.
Integrative annotation of 21,037 human genes validated by full-length cDNA clones.
Imanishi T, Itoh T, Suzuki Y, O'Donovan C, Fukuchi S, Koyanagi KO, Barrero RA, Tamura T, Yamaguchi-Kabata Y, Tanino M, Yura K, Miyazaki S, Ikeo K, Homma K, Kasprzyk A, Nishikawa T, Hirakawa M, Thierry-Mieg J, Thierry-Mieg D, Ashurst J, Jia L, Nakao M, Thomas MA, Mulder N, Karavidopoulou Y, Jin L, Kim S, Yasuda T, Lenhard B, Eveno E, Suzuki Y, Yamasaki C, Takeda J, Gough C, Hilton P, Fujii Y, Sakai H, Tanaka S, Amid C, Bellgard M, Bonaldo Mde F, Bono H, Bromberg SK, Brookes AJ, Bruford E, Carninci P, Chelala C, Couillault C, de Souza SJ, Debily MA, Devignes MD, Dubchak I, Endo T, Estreicher A, Eyras E, Fukami-Kobayashi K, Gopinath GR, Graudens E, Hahn Y, Han M, Han ZG, Hanada K, Hanaoka H, Harada E, Hashimoto K, Hinz U, Hirai M, Hishiki T, Hopkinson I, Imbeaud S, Inoko H, Kanapin A, Kaneko Y, Kasukawa T, Kelso J, Kersey P, Kikuno R, Kimura K, Korn B, Kuryshev V, Makalowska I, Makino T, Mano S, Mariage-Samson R, Mashima J, Matsuda H, Mewes HW, Minoshima S, Nagai K, Nagasaki H, Nagata N, Nigam R, Ogasawara O, Ohara O, Ohtsubo M, Okada N, Okido T, Oota S, Ota M, Ota T, Otsuki T, Piatier-Tonneau D, Poustka A, Ren SX, Saitou N, Sakai K, Sakamoto S, Sakate R, Schupp I, Servant F, … See abstract for full author list ➔ Imanishi T, et al. Among authors: de souza sj. PLoS Biol. 2004 Jun;2(6):e162. doi: 10.1371/journal.pbio.0020162. Epub 2004 Apr 20. PLoS Biol. 2004. PMID: 15103394 Free PMC article.
Long-range heterogeneity at the 3' ends of human mRNAs.
Iseli C, Stevenson BJ, de Souza SJ, Samaia HB, Camargo AA, Buetow KH, Strausberg RL, Simpson AJ, Bucher P, Jongeneel CV. Iseli C, et al. Among authors: de souza sj. Genome Res. 2002 Jul;12(7):1068-74. doi: 10.1101/gr.62002. Genome Res. 2002. PMID: 12097343 Free PMC article.
ExInt: an Exon/Intron database.
Sakharkar M, Long M, Tan TW, de Souza SJ. Sakharkar M, et al. Among authors: de souza sj. Nucleic Acids Res. 2000 Jan 1;28(1):191-2. doi: 10.1093/nar/28.1.191. Nucleic Acids Res. 2000. PMID: 10592222 Free PMC article.
The impact of SNPs on the interpretation of SAGE and MPSS experimental data.
Silva AP, De Souza JE, Galante PA, Riggins GJ, De Souza SJ, Camargo AA. Silva AP, et al. Among authors: de souza sj, de souza je. Nucleic Acids Res. 2004 Nov 23;32(20):6104-10. doi: 10.1093/nar/gkh937. Print 2004. Nucleic Acids Res. 2004. PMID: 15562001 Free PMC article.
Identification and complete sequencing of novel human transcripts through the use of mouse orthologs and testis cDNA sequences.
Ferreira EN, Pires LC, Parmigiani RB, Bettoni F, Puga RD, Pinheiro DG, Andrade LE, Cruz LO, Degaki TL, Faria M Jr, Festa F, Giannella-Neto D, Giorgi RR, Goldman GH, Granja F, Gruber A, Hackel C, Henrique-Silva F, Malnic B, Manzini CV, Marie SK, Martinez-Rossi NM, Oba-Shinjo SM, Pardini MI, Rahal P, Rainho CA, Rogatto SR, Romano CM, Rodrigues V, Sales MM, Savoldi M, da Silva ID, da Silva NP, de Souza SJ, Tajara EH, Silva WA Jr, Simpson AJ, Sogayar MC, Camargo AA, Carraro DM. Ferreira EN, et al. Among authors: de souza sj. Genet Mol Res. 2004 Dec 30;3(4):493-511. Genet Mol Res. 2004. PMID: 15688316 Free article.
Introns and gene evolution.
de Souza SJ, Long M, Gilbert W. de Souza SJ, et al. Genes Cells. 1996 Jun;1(6):493-505. doi: 10.1046/j.1365-2443.1996.d01-264.x. Genes Cells. 1996. PMID: 9078380 Free article. Review.
ExInt: an Exon Intron Database.
Sakharkar M, Passetti F, de Souza JE, Long M, de Souza SJ. Sakharkar M, et al. Among authors: de souza sj, de souza je. Nucleic Acids Res. 2002 Jan 1;30(1):191-4. doi: 10.1093/nar/30.1.191. Nucleic Acids Res. 2002. PMID: 11752290 Free PMC article.
137 results