Xie B - Search Results

1

Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells.

Ball MP, Li JB, Gao Y, Lee JH, LeProust EM, Park IH, Xie B, Daley GQ, Church GM. Ball MP, et al. Among authors: xie b. Nat Biotechnol. 2009 Apr;27(4):361-8. doi: 10.1038/nbt.1533. Epub 2009 Mar 29. Nat Biotechnol. 2009. PMID: 19329998 Free PMC article.

2

Multiplex amplification of large sets of human exons.

Porreca GJ, Zhang K, Li JB, Xie B, Austin D, Vassallo SL, LeProust EM, Peck BJ, Emig CJ, Dahl F, Gao Y, Church GM, Shendure J. Porreca GJ, et al. Among authors: xie b. Nat Methods. 2007 Nov;4(11):931-6. doi: 10.1038/nmeth1110. Epub 2007 Oct 14. Nat Methods. 2007. PMID: 17934468

3

Targeted bisulfite sequencing reveals changes in DNA methylation associated with nuclear reprogramming.

Deng J, Shoemaker R, Xie B, Gore A, LeProust EM, Antosiewicz-Bourget J, Egli D, Maherali N, Park IH, Yu J, Daley GQ, Eggan K, Hochedlinger K, Thomson J, Wang W, Gao Y, Zhang K. Deng J, et al. Among authors: xie b. Nat Biotechnol. 2009 Apr;27(4):353-60. doi: 10.1038/nbt.1530. Epub 2009 Mar 29. Nat Biotechnol. 2009. PMID: 19330000 Free PMC article.

4

Genome-wide identification of human RNA editing sites by parallel DNA capturing and sequencing.

Li JB, Levanon EY, Yoon JK, Aach J, Xie B, Leproust E, Zhang K, Gao Y, Church GM. Li JB, et al. Among authors: xie b. Science. 2009 May 29;324(5931):1210-3. doi: 10.1126/science.1170995. Science. 2009. PMID: 19478186

5

Multiplex padlock targeted sequencing reveals human hypermutable CpG variations.

Li JB, Gao Y, Aach J, Zhang K, Kryukov GV, Xie B, Ahlford A, Yoon JK, Rosenbaum AM, Zaranek AW, LeProust E, Sunyaev SR, Church GM. Li JB, et al. Among authors: xie b. Genome Res. 2009 Sep;19(9):1606-15. doi: 10.1101/gr.092213.109. Epub 2009 Jun 12. Genome Res. 2009. PMID: 19525355 Free PMC article.

6

Digital RNA allelotyping reveals tissue-specific and allele-specific gene expression in human.

Zhang K, Li JB, Gao Y, Egli D, Xie B, Deng J, Li Z, Lee JH, Aach J, Leproust EM, Eggan K, Church GM. Zhang K, et al. Among authors: xie b. Nat Methods. 2009 Aug;6(8):613-8. doi: 10.1038/nmeth.1357. Epub 2009 Jul 20. Nat Methods. 2009. PMID: 19620972 Free PMC article.

7

Neuronal activity modifies the DNA methylation landscape in the adult brain.

Guo JU, Ma DK, Mo H, Ball MP, Jang MH, Bonaguidi MA, Balazer JA, Eaves HL, Xie B, Ford E, Zhang K, Ming GL, Gao Y, Song H. Guo JU, et al. Among authors: xie b. Nat Neurosci. 2011 Aug 28;14(10):1345-51. doi: 10.1038/nn.2900. Nat Neurosci. 2011. PMID: 21874013 Free PMC article.

8

Distribution, recognition and regulation of non-CpG methylation in the adult mammalian brain.

Guo JU, Su Y, Shin JH, Shin J, Li H, Xie B, Zhong C, Hu S, Le T, Fan G, Zhu H, Chang Q, Gao Y, Ming GL, Song H. Guo JU, et al. Among authors: xie b. Nat Neurosci. 2014 Feb;17(2):215-22. doi: 10.1038/nn.3607. Epub 2013 Dec 22. Nat Neurosci. 2014. PMID: 24362762 Free PMC article.

9

Ab initio identification of transcription start sites in the Rhesus macaque genome by histone modification and RNA-Seq.

Liu Y, Han D, Han Y, Yan Z, Xie B, Li J, Qiao N, Hu H, Khaitovich P, Gao Y, Han JD. Liu Y, et al. Among authors: xie b. Nucleic Acids Res. 2011 Mar;39(4):1408-18. doi: 10.1093/nar/gkq956. Epub 2010 Oct 14. Nucleic Acids Res. 2011. PMID: 20952408 Free PMC article.

10

Detecting miRNAs in deep-sequencing data: a software performance comparison and evaluation.

Williamson V, Kim A, Xie B, McMichael GO, Gao Y, Vladimirov V. Williamson V, et al. Among authors: xie b. Brief Bioinform. 2013 Jan;14(1):36-45. doi: 10.1093/bib/bbs010. Epub 2012 Mar 24. Brief Bioinform. 2013. PMID: 23334922 Free PMC article.

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