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Statistical phylogenetic tree analysis using differences of means.
Arnaoudova E, Haws DC, Huggins P, Jaromczyk JW, Moore N, Schardl CL, Yoshida R. Arnaoudova E, et al. Among authors: huggins p. Front Neurosci. 2010 Aug 3;4:47. doi: 10.3389/fnins.2010.00047. eCollection 2010. Front Neurosci. 2010. PMID: 20802801 Free PMC article.
Bayes estimators for phylogenetic reconstruction.
Huggins PM, Li W, Haws D, Friedrich T, Liu J, Yoshida R. Huggins PM, et al. Syst Biol. 2011 Jul;60(4):528-40. doi: 10.1093/sysbio/syr021. Epub 2011 Apr 6. Syst Biol. 2011. PMID: 21471560 Free PMC article.
On the optimality of the neighbor-joining algorithm.
Eickmeyer K, Huggins P, Pachter L, Yoshida R. Eickmeyer K, et al. Among authors: huggins p. Algorithms Mol Biol. 2008 Apr 30;3:5. doi: 10.1186/1748-7188-3-5. Algorithms Mol Biol. 2008. PMID: 18447942 Free PMC article.
Cross species analysis of microarray expression data.
Lu Y, Huggins P, Bar-Joseph Z. Lu Y, et al. Among authors: huggins p. Bioinformatics. 2009 Jun 15;25(12):1476-83. doi: 10.1093/bioinformatics/btp247. Epub 2009 Apr 8. Bioinformatics. 2009. PMID: 19357096 Free PMC article. Review.
DECOD: fast and accurate discriminative DNA motif finding.
Huggins P, Zhong S, Shiff I, Beckerman R, Laptenko O, Prives C, Schulz MH, Simon I, Bar-Joseph Z. Huggins P, et al. Bioinformatics. 2011 Sep 1;27(17):2361-7. doi: 10.1093/bioinformatics/btr412. Epub 2011 Jul 12. Bioinformatics. 2011. PMID: 21752801 Free PMC article.
Toward the human genotope.
Huggins P, Pachter L, Sturmfels B. Huggins P, et al. Bull Math Biol. 2007 Nov;69(8):2723-35. doi: 10.1007/s11538-007-9244-7. Epub 2007 Sep 15. Bull Math Biol. 2007. PMID: 17874271
Parametric alignment of Drosophila genomes.
Dewey CN, Huggins PM, Woods K, Sturmfels B, Pachter L. Dewey CN, et al. PLoS Comput Biol. 2006 Jun 23;2(6):e73. doi: 10.1371/journal.pcbi.0020073. Epub 2006 Jun 23. PLoS Comput Biol. 2006. PMID: 16789815 Free PMC article.
Parametric analysis of alignment and phylogenetic uncertainty.
Malaspinas AS, Eriksson N, Huggins P. Malaspinas AS, et al. Among authors: huggins p. Bull Math Biol. 2011 Apr;73(4):795-810. doi: 10.1007/s11538-010-9610-8. Epub 2011 Mar 16. Bull Math Biol. 2011. PMID: 21409513
29 results