Ideker T - Search Results

1

PiNGO: a Cytoscape plugin to find candidate genes in biological networks.

Smoot M, Ono K, Ideker T, Maere S. Smoot M, et al. Among authors: ideker t. Bioinformatics. 2011 Apr 1;27(7):1030-1. doi: 10.1093/bioinformatics/btr045. Epub 2011 Jan 28. Bioinformatics. 2011. PMID: 21278188 Free PMC article.

2

Bioinformatics in the human interactome project.

Ideker T, Valencia A. Ideker T, et al. Bioinformatics. 2006 Dec 15;22(24):2973-4. doi: 10.1093/bioinformatics/btl579. Bioinformatics. 2006. PMID: 17142816 No abstract available.

3

Correcting for gene-specific dye bias in DNA microarrays using the method of maximum likelihood.

Kelley R, Feizi H, Ideker T. Kelley R, et al. Among authors: ideker t. Bioinformatics. 2008 Jan 1;24(1):71-7. doi: 10.1093/bioinformatics/btm347. Epub 2007 Jul 10. Bioinformatics. 2008. PMID: 17623705 Free PMC article.

4

Integrating physical and genetic maps: from genomes to interaction networks.

Beyer A, Bandyopadhyay S, Ideker T. Beyer A, et al. Among authors: ideker t. Nat Rev Genet. 2007 Sep;8(9):699-710. doi: 10.1038/nrg2144. Nat Rev Genet. 2007. PMID: 17703239 Free PMC article. Review.

5

Integration of biological networks and gene expression data using Cytoscape.

Cline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, Workman C, Christmas R, Avila-Campilo I, Creech M, Gross B, Hanspers K, Isserlin R, Kelley R, Killcoyne S, Lotia S, Maere S, Morris J, Ono K, Pavlovic V, Pico AR, Vailaya A, Wang PL, Adler A, Conklin BR, Hood L, Kuiper M, Sander C, Schmulevich I, Schwikowski B, Warner GJ, Ideker T, Bader GD. Cline MS, et al. Among authors: ideker t. Nat Protoc. 2007;2(10):2366-82. doi: 10.1038/nprot.2007.324. Nat Protoc. 2007. PMID: 17947979 Free PMC article.

6

NetworkBLAST: comparative analysis of protein networks.

Kalaev M, Smoot M, Ideker T, Sharan R. Kalaev M, et al. Among authors: ideker t. Bioinformatics. 2008 Feb 15;24(4):594-6. doi: 10.1093/bioinformatics/btm630. Epub 2008 Jan 2. Bioinformatics. 2008. PMID: 18174180

7

Protein networks in disease.

Ideker T, Sharan R. Ideker T, et al. Genome Res. 2008 Apr;18(4):644-52. doi: 10.1101/gr.071852.107. Genome Res. 2008. PMID: 18381899 Free PMC article. Review.

8

Functional genomic screen for modulators of ciliogenesis and cilium length.

Kim J, Lee JE, Heynen-Genel S, Suyama E, Ono K, Lee K, Ideker T, Aza-Blanc P, Gleeson JG. Kim J, et al. Among authors: ideker t. Nature. 2010 Apr 15;464(7291):1048-51. doi: 10.1038/nature08895. Nature. 2010. PMID: 20393563 Free PMC article.

9

Evidence mining and novelty assessment of protein-protein interactions with the ConsensusPathDB plugin for Cytoscape.

Pentchev K, Ono K, Herwig R, Ideker T, Kamburov A. Pentchev K, et al. Among authors: ideker t. Bioinformatics. 2010 Nov 1;26(21):2796-7. doi: 10.1093/bioinformatics/btq522. Epub 2010 Sep 16. Bioinformatics. 2010. PMID: 20847220 Free PMC article.

10

Cytoscape 2.8: new features for data integration and network visualization.

Smoot ME, Ono K, Ruscheinski J, Wang PL, Ideker T. Smoot ME, et al. Among authors: ideker t. Bioinformatics. 2011 Feb 1;27(3):431-2. doi: 10.1093/bioinformatics/btq675. Epub 2010 Dec 12. Bioinformatics. 2011. PMID: 21149340 Free PMC article.

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