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Probing for DNA damage with β-hairpins: similarities in incision efficiencies of bulky DNA adducts by prokaryotic and human nucleotide excision repair systems in vitro.
Liu Y, Reeves D, Kropachev K, Cai Y, Ding S, Kolbanovskiy M, Kolbanovskiy A, Bolton JL, Broyde S, Van Houten B, Geacintov NE. Liu Y, et al. Among authors: kolbanovskiy m, kolbanovskiy a. DNA Repair (Amst). 2011 Jul 15;10(7):684-96. doi: 10.1016/j.dnarep.2011.04.020. Epub 2011 Jul 8. DNA Repair (Amst). 2011. PMID: 21741328 Free PMC article.
Resistance of bulky DNA lesions to nucleotide excision repair can result from extensive aromatic lesion-base stacking interactions.
Reeves DA, Mu H, Kropachev K, Cai Y, Ding S, Kolbanovskiy A, Kolbanovskiy M, Chen Y, Krzeminski J, Amin S, Patel DJ, Broyde S, Geacintov NE. Reeves DA, et al. Among authors: kolbanovskiy a. Nucleic Acids Res. 2011 Nov 1;39(20):8752-64. doi: 10.1093/nar/gkr537. Epub 2011 Jul 15. Nucleic Acids Res. 2011. PMID: 21764772 Free PMC article.
Nucleotide excision repair of 2-acetylaminofluorene- and 2-aminofluorene-(C8)-guanine adducts: molecular dynamics simulations elucidate how lesion structure and base sequence context impact repair efficiencies.
Mu H, Kropachev K, Wang L, Zhang L, Kolbanovskiy A, Kolbanovskiy M, Geacintov NE, Broyde S. Mu H, et al. Among authors: kolbanovskiy a. Nucleic Acids Res. 2012 Oct;40(19):9675-90. doi: 10.1093/nar/gks788. Epub 2012 Aug 16. Nucleic Acids Res. 2012. PMID: 22904073 Free PMC article.
Adenine-DNA adducts derived from the highly tumorigenic Dibenzo[a,l]pyrene are resistant to nucleotide excision repair while guanine adducts are not.
Kropachev K, Kolbanovskiy M, Liu Z, Cai Y, Zhang L, Schwaid AG, Kolbanovskiy A, Ding S, Amin S, Broyde S, Geacintov NE. Kropachev K, et al. Among authors: kolbanovskiy a. Chem Res Toxicol. 2013 May 20;26(5):783-93. doi: 10.1021/tx400080k. Epub 2013 Apr 24. Chem Res Toxicol. 2013. PMID: 23570232 Free PMC article.
Nuclear magnetic resonance studies of an N2-guanine adduct derived from the tumorigen dibenzo[a,l]pyrene in DNA: impact of adduct stereochemistry, size, and local DNA sequence on solution conformations.
Rodríguez FA, Liu Z, Lin CH, Ding S, Cai Y, Kolbanovskiy A, Kolbanovskiy M, Amin S, Broyde S, Geacintov NE. Rodríguez FA, et al. Among authors: kolbanovskiy a. Biochemistry. 2014 Mar 25;53(11):1827-41. doi: 10.1021/bi4017044. Epub 2014 Mar 11. Biochemistry. 2014. PMID: 24617538 Free PMC article.
44 results