Vizcaíno JA - Search Results

1

The mzIdentML data standard for mass spectrometry-based proteomics results.

Jones AR, Eisenacher M, Mayer G, Kohlbacher O, Siepen J, Hubbard SJ, Selley JN, Searle BC, Shofstahl J, Seymour SL, Julian R, Binz PA, Deutsch EW, Hermjakob H, Reisinger F, Griss J, Vizcaíno JA, Chambers M, Pizarro A, Creasy D. Jones AR, et al. Among authors: vizcaino ja. Mol Cell Proteomics. 2012 Jul;11(7):M111.014381. doi: 10.1074/mcp.M111.014381. Epub 2012 Feb 27. Mol Cell Proteomics. 2012. PMID: 22375074 Free PMC article.

2

The PSI formal document process and its implementation on the PSI website.

Vizcaíno JA, Martens L, Hermjakob H, Julian RK, Paton NW. Vizcaíno JA, et al. Proteomics. 2007 Jul;7(14):2355-7. doi: 10.1002/pmic.200700064. Proteomics. 2007. PMID: 17570517

3

High Performance Proteomics: 7th HUPO Brain Proteome Project Workshop March 7-9, 2007 Wellcome Trust Conference Centre, Hinxton, UK.

Hamacher M, Stephan C, Eisenacher M, Lewczuk P, Wiltfang J, Martens L, Vizcaíno JA, Kwon KH, Yoo JS, Park YM, Beckers J, Horsch M, de Angelis MH, Cho ZH, Apweiler R, Meyer HE. Hamacher M, et al. Among authors: vizcaino ja. Proteomics. 2007 Aug;7(15):2490-6. doi: 10.1002/pmic.200700449. Proteomics. 2007. PMID: 17610211

4

Analysis of the experimental detection of central nervous system-related genes in human brain and cerebrospinal fluid datasets.

Mueller M, Vizcaíno JA, Jones P, Côté R, Thorneycroft D, Apweiler R, Hermjakob H, Martens L. Mueller M, et al. Among authors: vizcaino ja. Proteomics. 2008 Mar;8(6):1138-48. doi: 10.1002/pmic.200700761. Proteomics. 2008. PMID: 18283668

5

A HUPO test sample study reveals common problems in mass spectrometry-based proteomics.

Bell AW, Deutsch EW, Au CE, Kearney RE, Beavis R, Sechi S, Nilsson T, Bergeron JJ; HUPO Test Sample Working Group. Bell AW, et al. Nat Methods. 2009 Jun;6(6):423-30. doi: 10.1038/nmeth.1333. Nat Methods. 2009. PMID: 19448641 Free PMC article.

6

A guide to the Proteomics Identifications Database proteomics data repository.

Vizcaíno JA, Côté R, Reisinger F, Foster JM, Mueller M, Rameseder J, Hermjakob H, Martens L. Vizcaíno JA, et al. Proteomics. 2009 Sep;9(18):4276-83. doi: 10.1002/pmic.200900402. Proteomics. 2009. PMID: 19662629 Free PMC article.

7

The Proteomics Identifications database: 2010 update.

Vizcaíno JA, Côté R, Reisinger F, Barsnes H, Foster JM, Rameseder J, Hermjakob H, Martens L. Vizcaíno JA, et al. Nucleic Acids Res. 2010 Jan;38(Database issue):D736-42. doi: 10.1093/nar/gkp964. Epub 2009 Nov 11. Nucleic Acids Res. 2010. PMID: 19906717 Free PMC article.

8

PRIDE: Data submission and analysis.

Vizcaíno JA, Reisinger F, Côté R, Martens L. Vizcaíno JA, et al. Curr Protoc Protein Sci. 2010 Apr;Chapter 25:25.4.1-25.4.11. doi: 10.1002/0471140864.ps2504s60. Curr Protoc Protein Sci. 2010. PMID: 20393974

9

The Ontology Lookup Service: bigger and better.

Côté R, Reisinger F, Martens L, Barsnes H, Vizcaino JA, Hermjakob H. Côté R, et al. Among authors: vizcaino ja. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W155-60. doi: 10.1093/nar/gkq331. Epub 2010 May 11. Nucleic Acids Res. 2010. PMID: 20460452 Free PMC article.

10

Proteomics data repositories: providing a safe haven for your data and acting as a springboard for further research.

Vizcaíno JA, Foster JM, Martens L. Vizcaíno JA, et al. J Proteomics. 2010 Oct 10;73(11):2136-46. doi: 10.1016/j.jprot.2010.06.008. Epub 2010 Jul 6. J Proteomics. 2010. PMID: 20615486 Free PMC article. Review.

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