Xulvi-Brunet R - Search Results

1

Spontaneous network formation among cooperative RNA replicators.

Vaidya N, Manapat ML, Chen IA, Xulvi-Brunet R, Hayden EJ, Lehman N. Vaidya N, et al. Among authors: xulvi brunet r. Nature. 2012 Nov 1;491(7422):72-7. doi: 10.1038/nature11549. Epub 2012 Oct 17. Nature. 2012. PMID: 23075853

2

Comprehensive experimental fitness landscape and evolutionary network for small RNA.

Jiménez JI, Xulvi-Brunet R, Campbell GW, Turk-MacLeod R, Chen IA. Jiménez JI, et al. Among authors: xulvi brunet r. Proc Natl Acad Sci U S A. 2013 Sep 10;110(37):14984-9. doi: 10.1073/pnas.1307604110. Epub 2013 Aug 26. Proc Natl Acad Sci U S A. 2013. PMID: 23980164 Free PMC article.

3

Prebiotically plausible mechanisms increase compositional diversity of nucleic acid sequences.

Derr J, Manapat ML, Rajamani S, Leu K, Xulvi-Brunet R, Joseph I, Nowak MA, Chen IA. Derr J, et al. Among authors: xulvi brunet r. Nucleic Acids Res. 2012 May;40(10):4711-22. doi: 10.1093/nar/gks065. Epub 2012 Feb 7. Nucleic Acids Res. 2012. PMID: 22319215 Free PMC article.

4

Computational analysis of fitness landscapes and evolutionary networks from in vitro evolution experiments.

Xulvi-Brunet R, Campbell GW, Rajamani S, Jiménez JI, Chen IA. Xulvi-Brunet R, et al. Methods. 2016 Aug 15;106:86-96. doi: 10.1016/j.ymeth.2016.05.012. Epub 2016 May 19. Methods. 2016. PMID: 27211010

5

Good fences: the importance of setting boundaries for peaceful coexistence.

Rutherford A, Harmon D, Werfel J, Gard-Murray AS, Bar-Yam S, Gros A, Xulvi-Brunet R, Bar-Yam Y. Rutherford A, et al. Among authors: xulvi brunet r. PLoS One. 2014 May 21;9(5):e95660. doi: 10.1371/journal.pone.0095660. eCollection 2014. PLoS One. 2014. PMID: 24847861 Free PMC article.

6

Co-expression networks: graph properties and topological comparisons.

Xulvi-Brunet R, Li H. Xulvi-Brunet R, et al. Bioinformatics. 2010 Jan 15;26(2):205-14. doi: 10.1093/bioinformatics/btp632. Epub 2009 Nov 12. Bioinformatics. 2010. PMID: 19910304 Free PMC article.

7

Growing networks under geographical constraints.

Xulvi-Brunet R, Sokolov IM. Xulvi-Brunet R, et al. Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Apr;75(4 Pt 2):046117. doi: 10.1103/PhysRevE.75.046117. Epub 2007 Apr 30. Phys Rev E Stat Nonlin Soft Matter Phys. 2007. PMID: 17500971

8

Reshuffling scale-free networks: from random to assortative.

Xulvi-Brunet R, Sokolov IM. Xulvi-Brunet R, et al. Phys Rev E Stat Nonlin Soft Matter Phys. 2004 Dec;70(6 Pt 2):066102. doi: 10.1103/PhysRevE.70.066102. Epub 2004 Dec 2. Phys Rev E Stat Nonlin Soft Matter Phys. 2004. PMID: 15697429

9

Correlations in scale-free networks: tomography and percolation.

Xulvi-Brunet R, Pietsch W, Sokolov IM. Xulvi-Brunet R, et al. Phys Rev E Stat Nonlin Soft Matter Phys. 2003 Sep;68(3 Pt 2):036119. doi: 10.1103/PhysRevE.68.036119. Epub 2003 Sep 22. Phys Rev E Stat Nonlin Soft Matter Phys. 2003. PMID: 14524844

10

Evolving networks with disadvantaged long-range connections.

Xulvi-Brunet R, Sokolov IM. Xulvi-Brunet R, et al. Phys Rev E Stat Nonlin Soft Matter Phys. 2002 Aug;66(2 Pt 2):026118. doi: 10.1103/PhysRevE.66.026118. Epub 2002 Aug 26. Phys Rev E Stat Nonlin Soft Matter Phys. 2002. PMID: 12241248

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