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Immune epitope database analysis resource (IEDB-AR).
Zhang Q, Wang P, Kim Y, Haste-Andersen P, Beaver J, Bourne PE, Bui HH, Buus S, Frankild S, Greenbaum J, Lund O, Lundegaard C, Nielsen M, Ponomarenko J, Sette A, Zhu Z, Peters B. Zhang Q, et al. Among authors: kim y. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W513-8. doi: 10.1093/nar/gkn254. Epub 2008 May 31. Nucleic Acids Res. 2008. PMID: 18515843 Free PMC article.
Peptide binding predictions for HLA DR, DP and DQ molecules.
Wang P, Sidney J, Kim Y, Sette A, Lund O, Nielsen M, Peters B. Wang P, et al. Among authors: kim y. BMC Bioinformatics. 2010 Nov 22;11:568. doi: 10.1186/1471-2105-11-568. BMC Bioinformatics. 2010. PMID: 21092157 Free PMC article.
Immune epitope database analysis resource.
Kim Y, Ponomarenko J, Zhu Z, Tamang D, Wang P, Greenbaum J, Lundegaard C, Sette A, Lund O, Bourne PE, Nielsen M, Peters B. Kim Y, et al. Nucleic Acids Res. 2012 Jul;40(Web Server issue):W525-30. doi: 10.1093/nar/gks438. Epub 2012 May 18. Nucleic Acids Res. 2012. PMID: 22610854 Free PMC article.
Automated benchmarking of peptide-MHC class I binding predictions.
Trolle T, Metushi IG, Greenbaum JA, Kim Y, Sidney J, Lund O, Sette A, Peters B, Nielsen M. Trolle T, et al. Among authors: kim y. Bioinformatics. 2015 Jul 1;31(13):2174-81. doi: 10.1093/bioinformatics/btv123. Epub 2015 Feb 25. Bioinformatics. 2015. PMID: 25717196 Free PMC article.
Definition of epitopes and antigens recognized by vaccinia specific immune responses: their conservation in variola virus sequences, and use as a model system to study complex pathogens.
Sette A, Grey H, Oseroff C, Peters B, Moutaftsi M, Crotty S, Assarsson E, Greenbaum J, Kim Y, Kolla R, Tscharke D, Koelle D, Johnson RP, Blum J, Head S, Sidney J. Sette A, et al. Among authors: kim y. Vaccine. 2009 Dec 30;27 Suppl 6(Suppl 6):G21-6. doi: 10.1016/j.vaccine.2009.10.011. Vaccine. 2009. PMID: 20006135 Free PMC article. Review.
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