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ABRA: improved coding indel detection via assembly-based realignment.
Mose LE, Wilkerson MD, Hayes DN, Perou CM, Parker JS. Mose LE, et al. Among authors: perou cm. Bioinformatics. 2014 Oct;30(19):2813-5. doi: 10.1093/bioinformatics/btu376. Epub 2014 Jun 6. Bioinformatics. 2014. PMID: 24907369 Free PMC article.
Repeated observation of breast tumor subtypes in independent gene expression data sets.
Sorlie T, Tibshirani R, Parker J, Hastie T, Marron JS, Nobel A, Deng S, Johnsen H, Pesich R, Geisler S, Demeter J, Perou CM, Lønning PE, Brown PO, Børresen-Dale AL, Botstein D. Sorlie T, et al. Among authors: perou cm. Proc Natl Acad Sci U S A. 2003 Jul 8;100(14):8418-23. doi: 10.1073/pnas.0932692100. Epub 2003 Jun 26. Proc Natl Acad Sci U S A. 2003. PMID: 12829800 Free PMC article.
Adjustment of systematic microarray data biases.
Benito M, Parker J, Du Q, Wu J, Xiang D, Perou CM, Marron JS. Benito M, et al. Among authors: perou cm. Bioinformatics. 2004 Jan 1;20(1):105-14. doi: 10.1093/bioinformatics/btg385. Bioinformatics. 2004. PMID: 14693816
The molecular portraits of breast tumors are conserved across microarray platforms.
Hu Z, Fan C, Oh DS, Marron JS, He X, Qaqish BF, Livasy C, Carey LA, Reynolds E, Dressler L, Nobel A, Parker J, Ewend MG, Sawyer LR, Wu J, Liu Y, Nanda R, Tretiakova M, Ruiz Orrico A, Dreher D, Palazzo JP, Perreard L, Nelson E, Mone M, Hansen H, Mullins M, Quackenbush JF, Ellis MJ, Olopade OI, Bernard PS, Perou CM. Hu Z, et al. Among authors: perou cm. BMC Genomics. 2006 Apr 27;7:96. doi: 10.1186/1471-2164-7-96. BMC Genomics. 2006. PMID: 16643655 Free PMC article.
In vitro and in vivo analysis of B-Myb in basal-like breast cancer.
Thorner AR, Hoadley KA, Parker JS, Winkel S, Millikan RC, Perou CM. Thorner AR, et al. Among authors: perou cm. Oncogene. 2009 Feb 5;28(5):742-51. doi: 10.1038/onc.2008.430. Epub 2008 Dec 1. Oncogene. 2009. PMID: 19043454 Free PMC article.
Supervised risk predictor of breast cancer based on intrinsic subtypes.
Parker JS, Mullins M, Cheang MC, Leung S, Voduc D, Vickery T, Davies S, Fauron C, He X, Hu Z, Quackenbush JF, Stijleman IJ, Palazzo J, Marron JS, Nobel AB, Mardis E, Nielsen TO, Ellis MJ, Perou CM, Bernard PS. Parker JS, et al. Among authors: perou cm. J Clin Oncol. 2009 Mar 10;27(8):1160-7. doi: 10.1200/JCO.2008.18.1370. Epub 2009 Feb 9. J Clin Oncol. 2009. PMID: 19204204 Free PMC article. Corrected and republished.
560 results