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Enhanced regulatory sequence prediction using gapped k-mer features.
PLoS Comput Biol. 2014 Jul 17;10(7):e1003711. doi: 10.1371/journal.pcbi.1003711. eCollection 2014 Jul.
PLoS Comput Biol. 2014.
PMID: 25033408
Free PMC article.
Robust k-mer frequency estimation using gapped k-mers.
Ghandi M, Mohammad-Noori M, Beer MA.
Ghandi M, et al. Among authors: mohammad noori m.
J Math Biol. 2014 Aug;69(2):469-500. doi: 10.1007/s00285-013-0705-3. Epub 2013 Jul 17.
J Math Biol. 2014.
PMID: 23861010
Free PMC article.
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gkmSVM: an R package for gapped-kmer SVM.
Ghandi M, Mohammad-Noori M, Ghareghani N, Lee D, Garraway L, Beer MA.
Ghandi M, et al. Among authors: mohammad noori m.
Bioinformatics. 2016 Jul 15;32(14):2205-7. doi: 10.1093/bioinformatics/btw203. Epub 2016 Apr 19.
Bioinformatics. 2016.
PMID: 27153639
Free PMC article.
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Evolutionary solution for the RNA design problem.
Esmaili-Taheri A, Ganjtabesh M, Mohammad-Noori M.
Esmaili-Taheri A, et al. Among authors: mohammad noori m.
Bioinformatics. 2014 May 1;30(9):1250-8. doi: 10.1093/bioinformatics/btu001. Epub 2014 Jan 8.
Bioinformatics. 2014.
PMID: 24407223
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Protein complex prediction: A survey.
Zahiri J, Emamjomeh A, Bagheri S, Ivazeh A, Mahdevar G, Sepasi Tehrani H, Mirzaie M, Fakheri BA, Mohammad-Noori M.
Zahiri J, et al. Among authors: mohammad noori m.
Genomics. 2020 Jan;112(1):174-183. doi: 10.1016/j.ygeno.2019.01.011. Epub 2019 Jan 17.
Genomics. 2020.
PMID: 30660789
Free article.
Review.
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PPIevo: protein-protein interaction prediction from PSSM based evolutionary information.
Zahiri J, Yaghoubi O, Mohammad-Noori M, Ebrahimpour R, Masoudi-Nejad A.
Zahiri J, et al. Among authors: mohammad noori m.
Genomics. 2013 Oct;102(4):237-42. doi: 10.1016/j.ygeno.2013.05.006. Epub 2013 Jun 6.
Genomics. 2013.
PMID: 23747746
Free article.
Item in Clipboard
LocFuse: human protein-protein interaction prediction via classifier fusion using protein localization information.
Zahiri J, Mohammad-Noori M, Ebrahimpour R, Saadat S, Bozorgmehr JH, Goldberg T, Masoudi-Nejad A.
Zahiri J, et al. Among authors: mohammad noori m.
Genomics. 2014 Dec;104(6 Pt B):496-503. doi: 10.1016/j.ygeno.2014.10.006. Epub 2014 Oct 16.
Genomics. 2014.
PMID: 25458812
Free article.
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