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rNA: a fast and accurate short reads numerical aligner.
Vezzi F, Del Fabbro C, Tomescu AI, Policriti A. Vezzi F, et al. Among authors: policriti a. Bioinformatics. 2012 Jan 1;28(1):123-4. doi: 10.1093/bioinformatics/btr617. Epub 2011 Nov 13. Bioinformatics. 2012. PMID: 22084252
GAM-NGS: genomic assemblies merger for next generation sequencing.
Vicedomini R, Vezzi F, Scalabrin S, Arvestad L, Policriti A. Vicedomini R, et al. Among authors: policriti a. BMC Bioinformatics. 2013;14 Suppl 7(Suppl 7):S6. doi: 10.1186/1471-2105-14-S7-S6. Epub 2013 Apr 22. BMC Bioinformatics. 2013. PMID: 23815503 Free PMC article.
Automated FingerPrint Background removal: FPB.
Scalabrin S, Morgante M, Policriti A. Scalabrin S, et al. Among authors: policriti a. BMC Bioinformatics. 2009 Apr 30;10:127. doi: 10.1186/1471-2105-10-127. BMC Bioinformatics. 2009. PMID: 19405935 Free PMC article.
Chimera: a Bioconductor package for secondary analysis of fusion products.
Beccuti M, Carrara M, Cordero F, Lazzarato F, Donatelli S, Nadalin F, Policriti A, Calogero RA. Beccuti M, et al. Among authors: policriti a. Bioinformatics. 2014 Dec 15;30(24):3556-7. doi: 10.1093/bioinformatics/btu662. Epub 2014 Oct 6. Bioinformatics. 2014. PMID: 25286921 Free PMC article.
Structured motifs search.
Morgante M, Policriti A, Vitacolonna N, Zuccolo A. Morgante M, et al. Among authors: policriti a. J Comput Biol. 2005 Oct;12(8):1065-82. doi: 10.1089/cmb.2005.12.1065. J Comput Biol. 2005. PMID: 16241898
High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera.
Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS. Mica E, et al. Among authors: policriti a. BMC Genomics. 2009 Nov 25;10:558. doi: 10.1186/1471-2164-10-558. BMC Genomics. 2009. PMID: 19939267 Free PMC article. Corrected and republished.
The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution.
International Peach Genome Initiative; Verde I, Abbott AG, Scalabrin S, Jung S, Shu S, Marroni F, Zhebentyayeva T, Dettori MT, Grimwood J, Cattonaro F, Zuccolo A, Rossini L, Jenkins J, Vendramin E, Meisel LA, Decroocq V, Sosinski B, Prochnik S, Mitros T, Policriti A, Cipriani G, Dondini L, Ficklin S, Goodstein DM, Xuan P, Del Fabbro C, Aramini V, Copetti D, Gonzalez S, Horner DS, Falchi R, Lucas S, Mica E, Maldonado J, Lazzari B, Bielenberg D, Pirona R, Miculan M, Barakat A, Testolin R, Stella A, Tartarini S, Tonutti P, Arús P, Orellana A, Wells C, Main D, Vizzotto G, Silva H, Salamini F, Schmutz J, Morgante M, Rokhsar DS. International Peach Genome Initiative, et al. Among authors: policriti a. Nat Genet. 2013 May;45(5):487-94. doi: 10.1038/ng.2586. Epub 2013 Mar 24. Nat Genet. 2013. PMID: 23525075 Free article.
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