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Evolutionary forces affecting synonymous variations in plant genomes.
Clément Y, Sarah G, Holtz Y, Homa F, Pointet S, Contreras S, Nabholz B, Sabot F, Sauné L, Ardisson M, Bacilieri R, Besnard G, Berger A, Cardi C, De Bellis F, Fouet O, Jourda C, Khadari B, Lanaud C, Leroy T, Pot D, Sauvage C, Scarcelli N, Tregear J, Vigouroux Y, Yahiaoui N, Ruiz M, Santoni S, Labouisse JP, Pham JL, David J, Glémin S. Clément Y, et al. Among authors: pot d. PLoS Genet. 2017 May 22;13(5):e1006799. doi: 10.1371/journal.pgen.1006799. eCollection 2017 May. PLoS Genet. 2017. PMID: 28531201 Free PMC article.
The coffee genome provides insight into the convergent evolution of caffeine biosynthesis.
Denoeud F, Carretero-Paulet L, Dereeper A, Droc G, Guyot R, Pietrella M, Zheng C, Alberti A, Anthony F, Aprea G, Aury JM, Bento P, Bernard M, Bocs S, Campa C, Cenci A, Combes MC, Crouzillat D, Da Silva C, Daddiego L, De Bellis F, Dussert S, Garsmeur O, Gayraud T, Guignon V, Jahn K, Jamilloux V, Joët T, Labadie K, Lan T, Leclercq J, Lepelley M, Leroy T, Li LT, Librado P, Lopez L, Muñoz A, Noel B, Pallavicini A, Perrotta G, Poncet V, Pot D, Priyono, Rigoreau M, Rouard M, Rozas J, Tranchant-Dubreuil C, VanBuren R, Zhang Q, Andrade AC, Argout X, Bertrand B, de Kochko A, Graziosi G, Henry RJ, Jayarama, Ming R, Nagai C, Rounsley S, Sankoff D, Giuliano G, Albert VA, Wincker P, Lashermes P. Denoeud F, et al. Among authors: pot d. Science. 2014 Sep 5;345(6201):1181-4. doi: 10.1126/science.1255274. Epub 2014 Sep 4. Science. 2014. PMID: 25190796 Free article.
Identification of candidate genes for drought tolerance in coffee by high-throughput sequencing in the shoot apex of different Coffea arabica cultivars.
Mofatto LS, Carneiro Fde A, Vieira NG, Duarte KE, Vidal RO, Alekcevetch JC, Cotta MG, Verdeil JL, Lapeyre-Montes F, Lartaud M, Leroy T, De Bellis F, Pot D, Rodrigues GC, Carazzolle MF, Pereira GA, Andrade AC, Marraccini P. Mofatto LS, et al. Among authors: pot d. BMC Plant Biol. 2016 Apr 19;16:94. doi: 10.1186/s12870-016-0777-5. BMC Plant Biol. 2016. PMID: 27095276 Free PMC article.
A large set of 26 new reference transcriptomes dedicated to comparative population genomics in crops and wild relatives.
Sarah G, Homa F, Pointet S, Contreras S, Sabot F, Nabholz B, Santoni S, Sauné L, Ardisson M, Chantret N, Sauvage C, Tregear J, Jourda C, Pot D, Vigouroux Y, Chair H, Scarcelli N, Billot C, Yahiaoui N, Bacilieri R, Khadari B, Boccara M, Barnaud A, Péros JP, Labouisse JP, Pham JL, David J, Glémin S, Ruiz M. Sarah G, et al. Among authors: pot d. Mol Ecol Resour. 2017 May;17(3):565-580. doi: 10.1111/1755-0998.12587. Epub 2016 Aug 29. Mol Ecol Resour. 2017. PMID: 27487989
Genome-wide association study reveals candidate genes influencing lipids and diterpenes contents in Coffea arabica L.
Sant'Ana GC, Pereira LFP, Pot D, Ivamoto ST, Domingues DS, Ferreira RV, Pagiatto NF, da Silva BSR, Nogueira LM, Kitzberger CSG, Scholz MBS, de Oliveira FF, Sera GH, Padilha L, Labouisse JP, Guyot R, Charmetant P, Leroy T. Sant'Ana GC, et al. Among authors: pot d. Sci Rep. 2018 Jan 11;8(1):465. doi: 10.1038/s41598-017-18800-1. Sci Rep. 2018. PMID: 29323254 Free PMC article.
Diterpenes biochemical profile and transcriptional analysis of cytochrome P450s genes in leaves, roots, flowers, and during Coffea arabica L. fruit development.
Ivamoto ST, Sakuray LM, Ferreira LP, Kitzberger CSG, Scholz MBS, Pot D, Leroy T, Vieira LGE, Domingues DS, Pereira LFP. Ivamoto ST, et al. Among authors: pot d. Plant Physiol Biochem. 2017 Feb;111:340-347. doi: 10.1016/j.plaphy.2016.12.004. Epub 2016 Dec 3. Plant Physiol Biochem. 2017. PMID: 28002787
80 results