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Codon usage influences fitness through RNA toxicity.
Mittal P, Brindle J, Stephen J, Plotkin JB, Kudla G. Mittal P, et al. Among authors: plotkin jb. Proc Natl Acad Sci U S A. 2018 Aug 21;115(34):8639-8644. doi: 10.1073/pnas.1810022115. Epub 2018 Aug 6. Proc Natl Acad Sci U S A. 2018. PMID: 30082392 Free PMC article.
Codon usage and selection on proteins.
Plotkin JB, Dushoff J, Desai MM, Fraser HB. Plotkin JB, et al. J Mol Evol. 2006 Nov;63(5):635-53. doi: 10.1007/s00239-005-0233-x. Epub 2006 Oct 14. J Mol Evol. 2006. PMID: 17043750
Genome landscapes and bacteriophage codon usage.
Lucks JB, Nelson DR, Kudla GR, Plotkin JB. Lucks JB, et al. Among authors: plotkin jb. PLoS Comput Biol. 2008 Feb 29;4(2):e1000001. doi: 10.1371/journal.pcbi.1000001. PLoS Comput Biol. 2008. PMID: 18463708 Free PMC article.
The dynamics of adaptation on correlated fitness landscapes.
Kryazhimskiy S, Tkacik G, Plotkin JB. Kryazhimskiy S, et al. Among authors: plotkin jb. Proc Natl Acad Sci U S A. 2009 Nov 3;106(44):18638-43. doi: 10.1073/pnas.0905497106. Epub 2009 Oct 26. Proc Natl Acad Sci U S A. 2009. PMID: 19858497 Free PMC article.
Extortion and cooperation in the Prisoner's Dilemma.
Stewart AJ, Plotkin JB. Stewart AJ, et al. Among authors: plotkin jb. Proc Natl Acad Sci U S A. 2012 Jun 26;109(26):10134-5. doi: 10.1073/pnas.1208087109. Epub 2012 Jun 18. Proc Natl Acad Sci U S A. 2012. PMID: 22711812 Free PMC article. No abstract available.
Rate-limiting steps in yeast protein translation.
Shah P, Ding Y, Niemczyk M, Kudla G, Plotkin JB. Shah P, et al. Among authors: plotkin jb. Cell. 2013 Jun 20;153(7):1589-601. doi: 10.1016/j.cell.2013.05.049. Cell. 2013. PMID: 23791185 Free PMC article.
140 results