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Exploring Frequented Regions in Pan-Genomic Graphs.
Cleary A, Ramaraj T, Kahanda I, Mudge J, Mumey B. Cleary A, et al. IEEE/ACM Trans Comput Biol Bioinform. 2019 Sep-Oct;16(5):1424-1435. doi: 10.1109/TCBB.2018.2864564. Epub 2018 Aug 9. IEEE/ACM Trans Comput Biol Bioinform. 2019. PMID: 30106690
Araport Lives: An Updated Framework for Arabidopsis Bioinformatics.
Pasha A, Subramaniam S, Cleary A, Chen X, Berardini T, Farmer A, Town C, Provart N. Pasha A, et al. Among authors: cleary a. Plant Cell. 2020 Sep;32(9):2683-2686. doi: 10.1105/tpc.20.00358. Epub 2020 Jul 22. Plant Cell. 2020. PMID: 32699173 Free PMC article. No abstract available.
[No title available]
[No authors listed] [No authors listed] PMID: 33589954
Ten simple rules for developing visualization tools in genomics.
Durant E, Rouard M, Ganko EW, Muller C, Cleary AM, Farmer AD, Conte M, Sabot F. Durant E, et al. PLoS Comput Biol. 2022 Nov 10;18(11):e1010622. doi: 10.1371/journal.pcbi.1010622. eCollection 2022 Nov. PLoS Comput Biol. 2022. PMID: 36355753 Free PMC article. No abstract available.
A strategy for building and using a human reference pangenome.
Llamas B, Narzisi G, Schneider V, Audano PA, Biederstedt E, Blauvelt L, Bradbury P, Chang X, Chin CS, Fungtammasan A, Clarke WE, Cleary A, Ebler J, Eizenga J, Sibbesen JA, Markello CJ, Garrison E, Garg S, Hickey G, Lazo GR, Lin MF, Mahmoud M, Marschall T, Minkin I, Monlong J, Musunuri RL, Sagayaradj S, Novak AM, Rautiainen M, Regier A, Sedlazeck FJ, Siren J, Souilmi Y, Wagner J, Wrightsman T, Yokoyama TT, Zeng Q, Zook JM, Paten B, Busby B. Llamas B, et al. Among authors: cleary a. F1000Res. 2019 Oct 14;8:1751. doi: 10.12688/f1000research.19630.2. eCollection 2019. F1000Res. 2019. PMID: 34386196 Free PMC article.
212 results