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Exploring Frequented Regions in Pan-Genomic Graphs.
Cleary A, Ramaraj T, Kahanda I, Mudge J, Mumey B. Cleary A, et al. Among authors: mudge j. IEEE/ACM Trans Comput Biol Bioinform. 2019 Sep-Oct;16(5):1424-1435. doi: 10.1109/TCBB.2018.2864564. Epub 2018 Aug 9. IEEE/ACM Trans Comput Biol Bioinform. 2019. PMID: 30106690
Augmenting Chinese hamster genome assembly by identifying regions of high confidence.
Vishwanathan N, Bandyopadhyay AA, Fu HY, Sharma M, Johnson KC, Mudge J, Ramaraj T, Onsongo G, Silverstein KA, Jacob NM, Le H, Karypis G, Hu WS. Vishwanathan N, et al. Among authors: mudge j. Biotechnol J. 2016 Sep;11(9):1151-7. doi: 10.1002/biot.201500455. Epub 2016 Jul 19. Biotechnol J. 2016. PMID: 27374913
Comparative Genomics of an Unusual Biogeographic Disjunction in the Cotton Tribe (Gossypieae) Yields Insights into Genome Downsizing.
Grover CE, Arick MA 2nd, Conover JL, Thrash A, Hu G, Sanders WS, Hsu CY, Naqvi RZ, Farooq M, Li X, Gong L, Mudge J, Ramaraj T, Udall JA, Peterson DG, Wendel JF. Grover CE, et al. Among authors: mudge j. Genome Biol Evol. 2017 Dec 1;9(12):3328-3344. doi: 10.1093/gbe/evx248. Genome Biol Evol. 2017. PMID: 29194487 Free PMC article.
The transcriptome landscape of early maize meiosis.
Dukowic-Schulze S, Sundararajan A, Mudge J, Ramaraj T, Farmer AD, Wang M, Sun Q, Pillardy J, Kianian S, Retzel EF, Pawlowski WP, Chen C. Dukowic-Schulze S, et al. Among authors: mudge j. BMC Plant Biol. 2014 May 3;14:118. doi: 10.1186/1471-2229-14-118. BMC Plant Biol. 2014. PMID: 24885405 Free PMC article.
Hybrid assembly with long and short reads improves discovery of gene family expansions.
Miller JR, Zhou P, Mudge J, Gurtowski J, Lee H, Ramaraj T, Walenz BP, Liu J, Stupar RM, Denny R, Song L, Singh N, Maron LG, McCouch SR, McCombie WR, Schatz MC, Tiffin P, Young ND, Silverstein KAT. Miller JR, et al. Among authors: mudge j. BMC Genomics. 2017 Jul 19;18(1):541. doi: 10.1186/s12864-017-3927-8. BMC Genomics. 2017. PMID: 28724409 Free PMC article.
174 results