Wu Y - Search Results

1

Deep-learning augmented RNA-seq analysis of transcript splicing.

Zhang Z, Pan Z, Ying Y, Xie Z, Adhikari S, Phillips J, Carstens RP, Black DL, Wu Y, Xing Y. Zhang Z, et al. Among authors: wu y. Nat Methods. 2019 Apr;16(4):307-310. doi: 10.1038/s41592-019-0351-9. Epub 2019 Mar 25. Nat Methods. 2019. PMID: 30923373 Free PMC article.

2

SURVIV for survival analysis of mRNA isoform variation.

Shen S, Wang Y, Wang C, Wu YN, Xing Y. Shen S, et al. Among authors: wu yn. Nat Commun. 2016 Jun 9;7:11548. doi: 10.1038/ncomms11548. Nat Commun. 2016. PMID: 27279334 Free PMC article.

3

Detecting Allele-Specific Alternative Splicing from Population-Scale RNA-Seq Data.

Demirdjian L, Xu Y, Bahrami-Samani E, Pan Y, Stein S, Xie Z, Park E, Wu YN, Xing Y. Demirdjian L, et al. Among authors: wu yn. Am J Hum Genet. 2020 Sep 3;107(3):461-472. doi: 10.1016/j.ajhg.2020.07.005. Epub 2020 Aug 10. Am J Hum Genet. 2020. PMID: 32781045 Free PMC article.

4

rMATS: robust and flexible detection of differential alternative splicing from replicate RNA-Seq data.

Shen S, Park JW, Lu ZX, Lin L, Henry MD, Wu YN, Zhou Q, Xing Y. Shen S, et al. Among authors: wu yn. Proc Natl Acad Sci U S A. 2014 Dec 23;111(51):E5593-601. doi: 10.1073/pnas.1419161111. Epub 2014 Dec 5. Proc Natl Acad Sci U S A. 2014. PMID: 25480548 Free PMC article.

5

An expectation-maximization algorithm for probabilistic reconstructions of full-length isoforms from splice graphs.

Xing Y, Yu T, Wu YN, Roy M, Kim J, Lee C. Xing Y, et al. Among authors: wu yn. Nucleic Acids Res. 2006 Jun 6;34(10):3150-60. doi: 10.1093/nar/gkl396. Print 2006. Nucleic Acids Res. 2006. PMID: 16757580 Free PMC article.

6

Population and allelic variation of A-to-I RNA editing in human transcriptomes.

Park E, Guo J, Shen S, Demirdjian L, Wu YN, Lin L, Xing Y. Park E, et al. Among authors: wu yn. Genome Biol. 2017 Jul 28;18(1):143. doi: 10.1186/s13059-017-1270-7. Genome Biol. 2017. PMID: 28754146 Free PMC article.

7

A high-resolution map of active promoters in the human genome.

Kim TH, Barrera LO, Zheng M, Qu C, Singer MA, Richmond TA, Wu Y, Green RD, Ren B. Kim TH, et al. Among authors: wu y. Nature. 2005 Aug 11;436(7052):876-80. doi: 10.1038/nature03877. Epub 2005 Jun 29. Nature. 2005. PMID: 15988478 Free PMC article.

8

ChIP-chip: data, model, and analysis.

Zheng M, Barrera LO, Ren B, Wu YN. Zheng M, et al. Biometrics. 2007 Sep;63(3):787-96. doi: 10.1111/j.1541-0420.2007.00768.x. Biometrics. 2007. PMID: 17825010

9

A random-effects Markov transition model for Poisson-distributed repeated measures with non-ignorable missing values.

Li J, Yang X, Wu Y, Shoptaw S. Li J, et al. Among authors: wu y. Stat Med. 2007 May 30;26(12):2519-32. doi: 10.1002/sim.2717. Stat Med. 2007. PMID: 17106918

10

Randomized, Placebo-Controlled Trial of Targeting Neuroinflammation with Ibudilast to Treat Methamphetamine Use Disorder.

Heinzerling KG, Briones M, Thames AD, Hinkin CH, Zhu T, Wu YN, Shoptaw SJ. Heinzerling KG, et al. J Neuroimmune Pharmacol. 2020 Jun;15(2):238-248. doi: 10.1007/s11481-019-09883-w. Epub 2019 Dec 9. J Neuroimmune Pharmacol. 2020. PMID: 31820289 Free PMC article. Clinical Trial.

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