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Gigwa v2-Extended and improved genotype investigator.
Sempéré G, Pétel A, Rouard M, Frouin J, Hueber Y, De Bellis F, Larmande P. Sempéré G, et al. Among authors: larmande p. Gigascience. 2019 May 1;8(5):giz051. doi: 10.1093/gigascience/giz051. Gigascience. 2019. PMID: 31077313 Free PMC article.
Gigwa-Genotype investigator for genome-wide analyses.
Sempéré G, Philippe F, Dereeper A, Ruiz M, Sarah G, Larmande P. Sempéré G, et al. Among authors: larmande p. Gigascience. 2016 Jun 6;5:25. doi: 10.1186/s13742-016-0131-8. Gigascience. 2016. PMID: 27267926 Free PMC article.
Erratum to: Gigwa-Genotype investigator for genome-wide analyses.
Sempéré G, Philippe F, Dereeper A, Ruiz M, Sarah G, Larmande P. Sempéré G, et al. Among authors: larmande p. Gigascience. 2016 Nov 2;5(1):48. doi: 10.1186/s13742-016-0153-2. Gigascience. 2016. PMID: 27806726 Free PMC article. No abstract available.
BrAPI-an application programming interface for plant breeding applications.
Selby P, Abbeloos R, Backlund JE, Basterrechea Salido M, Bauchet G, Benites-Alfaro OE, Birkett C, Calaminos VC, Carceller P, Cornut G, Vasques Costa B, Edwards JD, Finkers R, Yanxin Gao S, Ghaffar M, Glaser P, Guignon V, Hok P, Kilian A, König P, Lagare JEB, Lange M, Laporte MA, Larmande P, LeBauer DS, Lyon DA, Marshall DS, Matthews D, Milne I, Mistry N, Morales N, Mueller LA, Neveu P, Papoutsoglou E, Pearce B, Perez-Masias I, Pommier C, Ramírez-González RH, Rathore A, Raquel AM, Raubach S, Rife T, Robbins K, Rouard M, Sarma C, Scholz U, Sempéré G, Shaw PD, Simon R, Soldevilla N, Stephen G, Sun Q, Tovar C, Uszynski G, Verouden M; BrAPI consortium. Selby P, et al. Among authors: larmande p. Bioinformatics. 2019 Oct 15;35(20):4147-4155. doi: 10.1093/bioinformatics/btz190. Bioinformatics. 2019. PMID: 30903186 Free PMC article.
Rice Galaxy: an open resource for plant science.
Juanillas V, Dereeper A, Beaume N, Droc G, Dizon J, Mendoza JR, Perdon JP, Mansueto L, Triplett L, Lang J, Zhou G, Ratharanjan K, Plale B, Haga J, Leach JE, Ruiz M, Thomson M, Alexandrov N, Larmande P, Kretzschmar T, Mauleon RP. Juanillas V, et al. Among authors: larmande p. Gigascience. 2019 May 1;8(5):giz028. doi: 10.1093/gigascience/giz028. Gigascience. 2019. PMID: 31107941 Free PMC article.
Benchmarking database systems for Genomic Selection implementation.
Nti-Addae Y, Matthews D, Ulat VJ, Syed R, Sempéré G, Pétel A, Renner J, Larmande P, Guignon V, Jones E, Robbins K. Nti-Addae Y, et al. Among authors: larmande p. Database (Oxford). 2019 Jan 1;2019:baz096. doi: 10.1093/database/baz096. Database (Oxford). 2019. PMID: 31508797 Free PMC article.
Managing High-Density Genotyping Data with Gigwa.
Sempéré G, Larmande P, Rouard M. Sempéré G, et al. Among authors: larmande p. Methods Mol Biol. 2022;2443:415-427. doi: 10.1007/978-1-0716-2067-0_21. Methods Mol Biol. 2022. PMID: 35037218
RicePilaf: a post-GWAS/QTL dashboard to integrate pangenomic, coexpression, regulatory, epigenomic, ontology, pathway, and text-mining information to provide functional insights into rice QTLs and GWAS loci.
Shrestha AMS, Gonzales MEM, Ong PCL, Larmande P, Lee HS, Jeung JU, Kohli A, Chebotarov D, Mauleon RP, Lee JS, McNally KL. Shrestha AMS, et al. Among authors: larmande p. Gigascience. 2024 Jan 2;13:giae013. doi: 10.1093/gigascience/giae013. Gigascience. 2024. PMID: 38832465 Free PMC article.
OryGenesDB: a database for rice reverse genetics.
Droc G, Ruiz M, Larmande P, Pereira A, Piffanelli P, Morel JB, Dievart A, Courtois B, Guiderdoni E, Périn C. Droc G, et al. Among authors: larmande p. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D736-40. doi: 10.1093/nar/gkj012. Nucleic Acids Res. 2006. PMID: 16381969 Free PMC article.
110 results