Nesvizhskii AI - Search Results

1

Tumor-Selective Altered Glycosylation and Functional Attenuation of CD73 in Human Hepatocellular Carcinoma.

Alcedo KP, Guerrero A, Basrur V, Fu D, Richardson ML, McLane JS, Tsou CC, Nesvizhskii AI, Welling TH, Lebrilla CB, Otey CA, Kim HJ, Omary MB, Snider NT. Alcedo KP, et al. Among authors: nesvizhskii ai. Hepatol Commun. 2019 Aug 9;3(10):1400-1414. doi: 10.1002/hep4.1410. eCollection 2019 Oct. Hepatol Commun. 2019. PMID: 31592495 Free PMC article.

2

Abacus: a computational tool for extracting and pre-processing spectral count data for label-free quantitative proteomic analysis.

Fermin D, Basrur V, Yocum AK, Nesvizhskii AI. Fermin D, et al. Among authors: nesvizhskii ai. Proteomics. 2011 Apr;11(7):1340-5. doi: 10.1002/pmic.201000650. Epub 2011 Feb 17. Proteomics. 2011. PMID: 21360675 Free PMC article.

3

Fusion peptides from oncogenic chimeric proteins as putative specific biomarkers of cancer.

Conlon KP, Basrur V, Rolland D, Wolfe T, Nesvizhskii AI, MacCoss MJ, Lim MS, Elenitoba-Johnson KS. Conlon KP, et al. Among authors: nesvizhskii ai. Mol Cell Proteomics. 2013 Oct;12(10):2714-23. doi: 10.1074/mcp.M113.029926. Epub 2013 Jul 8. Mol Cell Proteomics. 2013. PMID: 23836920 Free PMC article.

4

Global phosphoproteomic profiling reveals distinct signatures in B-cell non-Hodgkin lymphomas.

Rolland D, Basrur V, Conlon K, Wolfe T, Fermin D, Nesvizhskii AI, Lim MS, Elenitoba-Johnson KS. Rolland D, et al. Among authors: nesvizhskii ai. Am J Pathol. 2014 May;184(5):1331-42. doi: 10.1016/j.ajpath.2014.01.036. Epub 2014 Mar 22. Am J Pathol. 2014. PMID: 24667141 Free PMC article.

5

DIA-Umpire: comprehensive computational framework for data-independent acquisition proteomics.

Tsou CC, Avtonomov D, Larsen B, Tucholska M, Choi H, Gingras AC, Nesvizhskii AI. Tsou CC, et al. Among authors: nesvizhskii ai. Nat Methods. 2015 Mar;12(3):258-64, 7 p following 264. doi: 10.1038/nmeth.3255. Epub 2015 Jan 19. Nat Methods. 2015. PMID: 25599550 Free PMC article.

6

Large-scale determination of absolute phosphorylation stoichiometries in human cells by motif-targeting quantitative proteomics.

Tsai CF, Wang YT, Yen HY, Tsou CC, Ku WC, Lin PY, Chen HY, Nesvizhskii AI, Ishihama Y, Chen YJ. Tsai CF, et al. Among authors: nesvizhskii ai. Nat Commun. 2015 Mar 27;6:6622. doi: 10.1038/ncomms7622. Nat Commun. 2015. PMID: 25814448 Free PMC article.

7

Mining Missing Membrane Proteins by High-pH Reverse-Phase StageTip Fractionation and Multiple Reaction Monitoring Mass Spectrometry.

Kitata RB, Dimayacyac-Esleta BR, Choong WK, Tsai CF, Lin TD, Tsou CC, Weng SH, Chen YJ, Yang PC, Arco SD, Nesvizhskii AI, Sung TY, Chen YJ. Kitata RB, et al. Among authors: nesvizhskii ai. J Proteome Res. 2015 Sep 4;14(9):3658-69. doi: 10.1021/acs.jproteome.5b00477. Epub 2015 Aug 6. J Proteome Res. 2015. PMID: 26202522 Free PMC article.

8

QPROT: Statistical method for testing differential expression using protein-level intensity data in label-free quantitative proteomics.

Choi H, Kim S, Fermin D, Tsou CC, Nesvizhskii AI. Choi H, et al. Among authors: nesvizhskii ai. J Proteomics. 2015 Nov 3;129:121-126. doi: 10.1016/j.jprot.2015.07.036. Epub 2015 Aug 4. J Proteomics. 2015. PMID: 26254008 Free PMC article.

9

mapDIA: Preprocessing and statistical analysis of quantitative proteomics data from data independent acquisition mass spectrometry.

Teo G, Kim S, Tsou CC, Collins B, Gingras AC, Nesvizhskii AI, Choi H. Teo G, et al. Among authors: nesvizhskii ai. J Proteomics. 2015 Nov 3;129:108-120. doi: 10.1016/j.jprot.2015.09.013. Epub 2015 Sep 15. J Proteomics. 2015. PMID: 26381204 Free PMC article.

10

Data Independent Acquisition analysis in ProHits 4.0.

Liu G, Knight JD, Zhang JP, Tsou CC, Wang J, Lambert JP, Larsen B, Tyers M, Raught B, Bandeira N, Nesvizhskii AI, Choi H, Gingras AC. Liu G, et al. Among authors: nesvizhskii ai. J Proteomics. 2016 Oct 21;149:64-68. doi: 10.1016/j.jprot.2016.04.042. Epub 2016 Apr 29. J Proteomics. 2016. PMID: 27132685 Free PMC article.

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