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Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads.
Sanders JG, Nurk S, Salido RA, Minich J, Xu ZZ, Zhu Q, Martino C, Fedarko M, Arthur TD, Chen F, Boland BS, Humphrey GC, Brennan C, Sanders K, Gaffney J, Jepsen K, Khosroheidari M, Green C, Liyanage M, Dang JW, Phelan VV, Quinn RA, Bankevich A, Chang JT, Rana TM, Conrad DJ, Sandborn WJ, Smarr L, Dorrestein PC, Pevzner PA, Knight R. Sanders JG, et al. Among authors: conrad dj. Genome Biol. 2019 Oct 31;20(1):226. doi: 10.1186/s13059-019-1834-9. Genome Biol. 2019. PMID: 31672156 Free PMC article.
Ecological networking of cystic fibrosis lung infections.
Quinn RA, Whiteson K, Lim YW, Zhao J, Conrad D, LiPuma JJ, Rohwer F, Widder S. Quinn RA, et al. NPJ Biofilms Microbiomes. 2016 Dec 2;2:4. doi: 10.1038/s41522-016-0002-1. eCollection 2016. NPJ Biofilms Microbiomes. 2016. PMID: 28649398 Free PMC article.
Three-Dimensional Microbiome and Metabolome Cartography of a Diseased Human Lung.
Garg N, Wang M, Hyde E, da Silva RR, Melnik AV, Protsyuk I, Bouslimani A, Lim YW, Wong R, Humphrey G, Ackermann G, Spivey T, Brouha SS, Bandeira N, Lin GY, Rohwer F, Conrad DJ, Alexandrov T, Knight R, Dorrestein PC. Garg N, et al. Among authors: conrad dj. Cell Host Microbe. 2017 Nov 8;22(5):705-716.e4. doi: 10.1016/j.chom.2017.10.001. Epub 2017 Oct 19. Cell Host Microbe. 2017. PMID: 29056429 Free PMC article.
Niche partitioning of a pathogenic microbiome driven by chemical gradients.
Quinn RA, Comstock W, Zhang T, Morton JT, da Silva R, Tran A, Aksenov A, Nothias LF, Wangpraseurt D, Melnik AV, Ackermann G, Conrad D, Klapper I, Knight R, Dorrestein PC. Quinn RA, et al. Sci Adv. 2018 Sep 26;4(9):eaau1908. doi: 10.1126/sciadv.aau1908. eCollection 2018 Sep. Sci Adv. 2018. PMID: 30263961 Free PMC article.
80 results