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Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads.
Sanders JG, Nurk S, Salido RA, Minich J, Xu ZZ, Zhu Q, Martino C, Fedarko M, Arthur TD, Chen F, Boland BS, Humphrey GC, Brennan C, Sanders K, Gaffney J, Jepsen K, Khosroheidari M, Green C, Liyanage M, Dang JW, Phelan VV, Quinn RA, Bankevich A, Chang JT, Rana TM, Conrad DJ, Sandborn WJ, Smarr L, Dorrestein PC, Pevzner PA, Knight R. Sanders JG, et al. Among authors: khosroheidari m. Genome Biol. 2019 Oct 31;20(1):226. doi: 10.1186/s13059-019-1834-9. Genome Biol. 2019. PMID: 31672156 Free PMC article.
From Sample to Multi-Omics Conclusions in under 48 Hours.
Quinn RA, Navas-Molina JA, Hyde ER, Song SJ, Vázquez-Baeza Y, Humphrey G, Gaffney J, Minich JJ, Melnik AV, Herschend J, DeReus J, Durant A, Dutton RJ, Khosroheidari M, Green C, da Silva R, Dorrestein PC, Knight R. Quinn RA, et al. Among authors: khosroheidari m. mSystems. 2016 Apr 26;1(2):e00038-16. doi: 10.1128/mSystems.00038-16. eCollection 2016 Mar-Apr. mSystems. 2016. PMID: 27822524 Free PMC article.
Immunodeficiency and autoimmune enterocolopathy linked to NFAT5 haploinsufficiency.
Boland BS, Widjaja CE, Banno A, Zhang B, Kim SH, Stoven S, Peterson MR, Jones MC, Su HI, Crowe SE, Bui JD, Ho SB, Okugawa Y, Goel A, Marietta EV, Khosroheidari M, Jepsen K, Aramburu J, López-Rodríguez C, Sandborn WJ, Murray JA, Harismendy O, Chang JT. Boland BS, et al. Among authors: khosroheidari m. J Immunol. 2015 Mar 15;194(6):2551-60. doi: 10.4049/jimmunol.1401463. Epub 2015 Feb 9. J Immunol. 2015. PMID: 25667416 Free PMC article.
Genetic and epigenetic profiling of CLL disease progression reveals limited somatic evolution and suggests a relationship to memory-cell development.
Smith EN, Ghia EM, DeBoever CM, Rassenti LZ, Jepsen K, Yoon KA, Matsui H, Rozenzhak S, Alakus H, Shepard PJ, Dai Y, Khosroheidari M, Bina M, Gunderson KL, Messer K, Muthuswamy L, Hudson TJ, Harismendy O, Barrett CL, Jamieson CH, Carson DA, Kipps TJ, Frazer KA. Smith EN, et al. Among authors: khosroheidari m. Blood Cancer J. 2015 Apr 10;5(4):e303. doi: 10.1038/bcj.2015.14. Blood Cancer J. 2015. PMID: 25860294 Free PMC article.
A modified precipitation method to isolate urinary exosomes.
Kanchi Ravi R, Khosroheidari M, DiStefano JK. Kanchi Ravi R, et al. Among authors: khosroheidari m. J Vis Exp. 2015 Jan 16;(95):51158. doi: 10.3791/51158. J Vis Exp. 2015. PMID: 25651044 Free PMC article.
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