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On the generalizability of diffusion MRI signal representations across acquisition parameters, sequences and tissue types: Chronicles of the MEMENTO challenge.
De Luca A, Ianus A, Leemans A, Palombo M, Shemesh N, Zhang H, Alexander DC, Nilsson M, Froeling M, Biessels GJ, Zucchelli M, Frigo M, Albay E, Sedlar S, Alimi A, Deslauriers-Gauthier S, Deriche R, Fick R, Afzali M, Pieciak T, Bogusz F, Aja-Fernández S, Özarslan E, Jones DK, Chen H, Jin M, Zhang Z, Wang F, Nath V, Parvathaneni P, Morez J, Sijbers J, Jeurissen B, Fadnavis S, Endres S, Rokem A, Garyfallidis E, Sanchez I, Prchkovska V, Rodrigues P, Landman BA, Schilling KG. De Luca A, et al. Among authors: garyfallidis e. Neuroimage. 2021 Oct 15;240:118367. doi: 10.1016/j.neuroimage.2021.118367. Epub 2021 Jul 6. Neuroimage. 2021. PMID: 34237442 Free PMC article.
Pandora: 4-D White Matter Bundle Population-Based Atlases Derived from Diffusion MRI Fiber Tractography.
Hansen CB, Yang Q, Lyu I, Rheault F, Kerley C, Chandio BQ, Fadnavis S, Williams O, Shafer AT, Resnick SM, Zald DH, Cutting LE, Taylor WD, Boyd B, Garyfallidis E, Anderson AW, Descoteaux M, Landman BA, Schilling KG. Hansen CB, et al. Among authors: garyfallidis e. Neuroinformatics. 2021 Jul;19(3):447-460. doi: 10.1007/s12021-020-09497-1. Epub 2020 Nov 16. Neuroinformatics. 2021. PMID: 33196967 Free PMC article.
QSIPrep: an integrative platform for preprocessing and reconstructing diffusion MRI data.
Cieslak M, Cook PA, He X, Yeh FC, Dhollander T, Adebimpe A, Aguirre GK, Bassett DS, Betzel RF, Bourque J, Cabral LM, Davatzikos C, Detre JA, Earl E, Elliott MA, Fadnavis S, Fair DA, Foran W, Fotiadis P, Garyfallidis E, Giesbrecht B, Gur RC, Gur RE, Kelz MB, Keshavan A, Larsen BS, Luna B, Mackey AP, Milham MP, Oathes DJ, Perrone A, Pines AR, Roalf DR, Richie-Halford A, Rokem A, Sydnor VJ, Tapera TM, Tooley UA, Vettel JM, Yeatman JD, Grafton ST, Satterthwaite TD. Cieslak M, et al. Among authors: garyfallidis e. Nat Methods. 2021 Jul;18(7):775-778. doi: 10.1038/s41592-021-01185-5. Epub 2021 Jun 21. Nat Methods. 2021. PMID: 34155395 Free PMC article.
Bifurcated Topological Optimization for IVIM.
Fadnavis S, Endres S, Wen Q, Wu YC, Cheng H, Koudoro S, Rane S, Rokem A, Garyfallidis E. Fadnavis S, et al. Among authors: garyfallidis e. Front Neurosci. 2021 Dec 15;15:779025. doi: 10.3389/fnins.2021.779025. eCollection 2021. Front Neurosci. 2021. PMID: 34975382 Free PMC article.
MASiVar: Multisite, multiscanner, and multisubject acquisitions for studying variability in diffusion weighted MRI.
Cai LY, Yang Q, Kanakaraj P, Nath V, Newton AT, Edmonson HA, Luci J, Conrad BN, Price GR, Hansen CB, Kerley CI, Ramadass K, Yeh FC, Kang H, Garyfallidis E, Descoteaux M, Rheault F, Schilling KG, Landman BA. Cai LY, et al. Among authors: garyfallidis e. Magn Reson Med. 2021 Dec;86(6):3304-3320. doi: 10.1002/mrm.28926. Epub 2021 Jul 16. Magn Reson Med. 2021. PMID: 34270123 Free PMC article.
Learning white matter subject-specific segmentation from structural MRI.
Yang Q, Hansen CB, Cai LY, Rheault F, Lee HH, Bao S, Chandio BQ, Williams O, Resnick SM, Garyfallidis E, Anderson AW, Descoteaux M, Schilling KG, Landman BA. Yang Q, et al. Among authors: garyfallidis e. Med Phys. 2022 Apr;49(4):2502-2513. doi: 10.1002/mp.15495. Epub 2022 Feb 7. Med Phys. 2022. PMID: 35090192 Free PMC article.
Brainhack: Developing a culture of open, inclusive, community-driven neuroscience.
Gau R, Noble S, Heuer K, Bottenhorn KL, Bilgin IP, Yang YF, Huntenburg JM, Bayer JMM, Bethlehem RAI, Rhoads SA, Vogelbacher C, Borghesani V, Levitis E, Wang HT, Van Den Bossche S, Kobeleva X, Legarreta JH, Guay S, Atay SM, Varoquaux GP, Huijser DC, Sandström MS, Herholz P, Nastase SA, Badhwar A, Dumas G, Schwab S, Moia S, Dayan M, Bassil Y, Brooks PP, Mancini M, Shine JM, O'Connor D, Xie X, Poggiali D, Friedrich P, Heinsfeld AS, Riedl L, Toro R, Caballero-Gaudes C, Eklund A, Garner KG, Nolan CR, Demeter DV, Barrios FA, Merchant JS, McDevitt EA, Oostenveld R, Craddock RC, Rokem A, Doyle A, Ghosh SS, Nikolaidis A, Stanley OW, Uruñuela E; Brainhack Community. Gau R, et al. Neuron. 2021 Jun 2;109(11):1769-1775. doi: 10.1016/j.neuron.2021.04.001. Epub 2021 Apr 30. Neuron. 2021. PMID: 33932337 Free PMC article.
What's new and what's next in diffusion MRI preprocessing.
Tax CMW, Bastiani M, Veraart J, Garyfallidis E, Okan Irfanoglu M. Tax CMW, et al. Among authors: garyfallidis e. Neuroimage. 2022 Apr 1;249:118830. doi: 10.1016/j.neuroimage.2021.118830. Epub 2021 Dec 26. Neuroimage. 2022. PMID: 34965454 Free PMC article. Review.
40 results