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PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph.
Gautreau G, Bazin A, Gachet M, Planel R, Burlot L, Dubois M, Perrin A, Médigue C, Calteau A, Cruveiller S, Matias C, Ambroise C, Rocha EPC, Vallenet D. Gautreau G, et al. Among authors: perrin a. PLoS Comput Biol. 2020 Mar 19;16(3):e1007732. doi: 10.1371/journal.pcbi.1007732. eCollection 2020 Mar. PLoS Comput Biol. 2020. PMID: 32191703 Free PMC article.
Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain.
Perrin A, Larsonneur E, Nicholson AC, Edwards DJ, Gundlach KM, Whitney AM, Gulvik CA, Bell ME, Rendueles O, Cury J, Hugon P, Clermont D, Enouf V, Loparev V, Juieng P, Monson T, Warshauer D, Elbadawi LI, Walters MS, Crist MB, Noble-Wang J, Borlaug G, Rocha EPC, Criscuolo A, Touchon M, Davis JP, Holt KE, McQuiston JR, Brisse S. Perrin A, et al. Nat Commun. 2017 May 24;8:15483. doi: 10.1038/ncomms15483. Nat Commun. 2017. PMID: 28537263 Free PMC article.
Correction: PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph.
Gautreau G, Bazin A, Gachet M, Planel R, Burlot L, Dubois M, Perrin A, Médigue C, Calteau A, Cruveiller S, Matias C, Ambroise C, Rocha EPC, Vallenet D. Gautreau G, et al. Among authors: perrin a. PLoS Comput Biol. 2021 Dec 10;17(12):e1009687. doi: 10.1371/journal.pcbi.1009687. eCollection 2021 Dec. PLoS Comput Biol. 2021. PMID: 34890406 Free PMC article.
Spread of carbapenemase-producing Morganella spp from 2013 to 2021: a comparative genomic study.
Bonnin RA, Creton E, Perrin A, Girlich D, Emeraud C, Jousset AB, Duque M, Jacquemin A, Hopkins K, Bogaerts P, Glupczynski Y, Pfennigwerth N, Gniadkowski M, Hendrickx APA, van der Zwaluw K, Apfalter P, Hartl R, Studentova V, Hrabak J, Larrouy-Maumus G, Rocha EPC, Naas T, Dortet L. Bonnin RA, et al. Among authors: perrin a. Lancet Microbe. 2024 Apr 24:S2666-5247(23)00407-X. doi: 10.1016/S2666-5247(23)00407-X. Online ahead of print. Lancet Microbe. 2024. PMID: 38677305 Free article.
Assisted transcriptome reconstruction and splicing orthology.
Blanquart S, Varré JS, Guertin P, Perrin A, Bergeron A, Swenson KM. Blanquart S, et al. Among authors: perrin a. BMC Genomics. 2016 Nov 11;17(Suppl 10):786. doi: 10.1186/s12864-016-3103-6. BMC Genomics. 2016. PMID: 28185551 Free PMC article.
ProCARs: Progressive Reconstruction of Ancestral Gene Orders.
Perrin A, Varré JS, Blanquart S, Ouangraoua A. Perrin A, et al. BMC Genomics. 2015;16 Suppl 5(Suppl 5):S6. doi: 10.1186/1471-2164-16-S5-S6. Epub 2015 May 26. BMC Genomics. 2015. PMID: 26040958 Free PMC article.
Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020.
Alm E, Broberg EK, Connor T, Hodcroft EB, Komissarov AB, Maurer-Stroh S, Melidou A, Neher RA, O'Toole Á, Pereyaslov D; WHO European Region sequencing laboratories and GISAID EpiCoV group; WHO European Region sequencing laboratories and GISAID EpiCoV group*. Alm E, et al. Euro Surveill. 2020 Aug;25(32):2001410. doi: 10.2807/1560-7917.ES.2020.25.32.2001410. Euro Surveill. 2020. PMID: 32794443 Free PMC article.
689 results